Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G22100.1 | Thale cress | nucleus | 34.75 | 55.76 |
| Bra030265.1-P | Field mustard | nucleus | 32.63 | 54.64 |
| CDY15850 | Canola | nucleus | 32.63 | 54.05 |
| AT5G53720.1 | Thale cress | cytosol | 5.55 | 34.0 |
| AT2G22090.2 | Thale cress | nucleus | 14.03 | 24.78 |
| AT5G53680.1 | Thale cress | cytosol | 5.87 | 21.3 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 5.87 | 20.57 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 13.05 | 20.41 |
| AT2G41060.3 | Thale cress | nucleus | 14.85 | 20.18 |
| AT3G56860.10 | Thale cress | nucleus | 14.85 | 19.04 |
| Solyc04g011560.2.1 | Tomato | nucleus | 13.54 | 17.66 |
| AT1G33470.1 | Thale cress | cytosol | 6.85 | 17.14 |
| PGSC0003DMT400016249 | Potato | nucleus | 13.7 | 17.07 |
| AT1G76460.1 | Thale cress | nucleus | 7.83 | 16.84 |
| AT1G20880.1 | Thale cress | nucleus | 7.5 | 16.79 |
| AT3G15010.2 | Thale cress | nucleus | 10.93 | 16.58 |
| AT3G54770.1 | Thale cress | nucleus | 6.85 | 16.09 |
| AT2G46780.1 | Thale cress | nucleus | 7.5 | 13.69 |
| AT1G78260.1 | Thale cress | nucleus | 6.2 | 13.24 |
| AT1G22330.1 | Thale cress | nucleus | 5.71 | 12.03 |
| AT1G17640.1 | Thale cress | nucleus | 7.01 | 11.65 |
| AT2G33410.1 | Thale cress | nucleus | 7.67 | 11.63 |
| AT1G22910.3 | Thale cress | nucleus | 6.36 | 11.24 |
| AT4G14300.1 | Thale cress | nucleus | 7.5 | 11.19 |
| AT3G13224.2 | Thale cress | nucleus | 6.53 | 11.17 |
| AT3G06970.1 | Thale cress | nucleus | 5.71 | 11.04 |
| AT4G36960.2 | Thale cress | cytosol | 6.69 | 10.82 |
| AT5G40490.1 | Thale cress | nucleus | 7.34 | 10.64 |
| AT3G07810.2 | Thale cress | nucleus | 7.5 | 9.29 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 6.69 | 9.05 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 5.22 | 8.89 |
| AT4G26650.1 | Thale cress | nucleus | 6.2 | 8.35 |
| AT5G55550.10 | Thale cress | nucleus | 5.71 | 6.9 |
Protein Annotations
| Gene3D:2.20.28.110 | Gene3D:3.30.160.60 | Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:816456 | ProteinID:AAC16468.2 |
| ProteinID:AEC06874.1 | ArrayExpress:AT2G19380 | EnsemblPlantsGene:AT2G19380 | RefSeq:AT2G19380 | TAIR:AT2G19380 | RefSeq:AT2G19380-TAIR-G |
| EnsemblPlants:AT2G19380.1 | TAIR:AT2G19380.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | GO:GO:0046872 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:IPR013087 | InterPro:Matrin/U1-like-C_Znf_C2H2 | RefSeq:NP_565450.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| UniProt:O64571 | PFAM:PF00076 | PFAM:PF08790 | PFAM:PF12874 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 |
| PFscan:PS51804 | PANTHER:PTHR44578 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00355 | SMART:SM00360 |
| SMART:SM00451 | SUPFAM:SSF54928 | SUPFAM:SSF57667 | UniParc:UPI000009D70D | InterPro:Znf_C2H2_LYAR | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
UBA1CUBP1-associated proteins 1C [Source:UniProtKB/Swiss-Prot;Acc:O64571]
Coordinates
chr2:+:8383807..8387012
Molecular Weight (calculated)
69601.0 Da
IEP (calculated)
7.377
GRAVY (calculated)
-0.862
Length
613 amino acids
Sequence
(BLAST)
(BLAST)
001: MVWFQCDDCG ENLKKPRLPR HMSMCTATKF SCIDCGNMFG QVSVHYHNQC ITEAEKYGPM VRSNGESSKQ KHDFDINAEL FNSQWFCSLC NATMTCEQDY
101: FAHVYGKKHQ EKANEVADMD YSKQQSEHPA VDKNNLTQQP DLDIYVGLSN DYPWFCSLCD INATSEQTLL AHANGKKHRV KVERFDAEQQ KRQSTQHSTV
201: DKKDYSKQQI EVDINVGLSN CYPWFCSLCN VKATCQQNLL SHANGRKHRE NVELFDATQQ QQLEKTTVDK KDTTVNASDG NSEQKKVDLL VSSGVANGYS
301: QAHKKRKLET CDETWKREVV QAEEAKGGGE QKSESKKAKK QDKEKKRKKD KKQTKSDSDF EHDKEDIKQL LVAYSKEELV NLIYKTAEKG SRLISAILES
401: ADRDIAQRNI FVRGFGWDTT QENLKTAFES YGEIEECSVV MDKDTGRGKG YGFVMFKTRK GAREALKRPE KRMYNRIVVC NLASEKPGKA GKEQDMAEPV
501: NIDLTKMANQ SEAVLPGIEL GRGHVLEKMH HQQQQTMDMF GQNMPFYGYS HQFPGFDPMY GALSGNQMLA GLPNYGMFGS GMMTNQGSML PPPNHLGMAG
601: QYFGDGEQAW HQR
101: FAHVYGKKHQ EKANEVADMD YSKQQSEHPA VDKNNLTQQP DLDIYVGLSN DYPWFCSLCD INATSEQTLL AHANGKKHRV KVERFDAEQQ KRQSTQHSTV
201: DKKDYSKQQI EVDINVGLSN CYPWFCSLCN VKATCQQNLL SHANGRKHRE NVELFDATQQ QQLEKTTVDK KDTTVNASDG NSEQKKVDLL VSSGVANGYS
301: QAHKKRKLET CDETWKREVV QAEEAKGGGE QKSESKKAKK QDKEKKRKKD KKQTKSDSDF EHDKEDIKQL LVAYSKEELV NLIYKTAEKG SRLISAILES
401: ADRDIAQRNI FVRGFGWDTT QENLKTAFES YGEIEECSVV MDKDTGRGKG YGFVMFKTRK GAREALKRPE KRMYNRIVVC NLASEKPGKA GKEQDMAEPV
501: NIDLTKMANQ SEAVLPGIEL GRGHVLEKMH HQQQQTMDMF GQNMPFYGYS HQFPGFDPMY GALSGNQMLA GLPNYGMFGS GMMTNQGSML PPPNHLGMAG
601: QYFGDGEQAW HQR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.