Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76950 | Canola | nucleus | 75.5 | 85.06 |
| Bra031230.1-P | Field mustard | nucleus | 72.05 | 81.43 |
| CDY13782 | Canola | nucleus | 71.76 | 81.11 |
| AT5G53720.1 | Thale cress | cytosol | 12.68 | 44.0 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 36.02 | 31.89 |
| Solyc04g011560.2.1 | Tomato | nucleus | 36.6 | 27.02 |
| PGSC0003DMT400016249 | Potato | nucleus | 38.04 | 26.83 |
| AT5G53680.1 | Thale cress | cytosol | 12.1 | 24.85 |
| AT2G22100.1 | Thale cress | nucleus | 25.65 | 23.3 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 11.24 | 22.29 |
| AT2G41060.3 | Thale cress | nucleus | 26.51 | 20.4 |
| AT3G15010.2 | Thale cress | nucleus | 23.34 | 20.05 |
| AT1G20880.1 | Thale cress | nucleus | 14.99 | 18.98 |
| AT3G56860.10 | Thale cress | nucleus | 25.94 | 18.83 |
| AT1G33470.1 | Thale cress | cytosol | 12.97 | 18.37 |
| AT1G76460.1 | Thale cress | nucleus | 14.99 | 18.25 |
| AT1G22330.1 | Thale cress | nucleus | 14.12 | 16.84 |
| AT1G78260.1 | Thale cress | nucleus | 13.54 | 16.38 |
| AT3G54770.1 | Thale cress | nucleus | 11.82 | 15.71 |
| AT2G46780.1 | Thale cress | nucleus | 13.83 | 14.29 |
| AT2G19380.1 | Thale cress | nucleus | 24.78 | 14.03 |
| AT1G17640.1 | Thale cress | nucleus | 14.7 | 13.82 |
| AT1G22910.3 | Thale cress | nucleus | 13.54 | 13.54 |
| AT4G14300.1 | Thale cress | nucleus | 14.41 | 12.17 |
| AT3G06970.1 | Thale cress | nucleus | 10.95 | 11.99 |
| AT2G33410.1 | Thale cress | nucleus | 13.54 | 11.63 |
| AT3G13224.2 | Thale cress | nucleus | 11.82 | 11.45 |
| AT5G40490.1 | Thale cress | nucleus | 13.26 | 10.87 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 10.95 | 10.56 |
| AT3G07810.2 | Thale cress | nucleus | 14.99 | 10.51 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 13.54 | 10.38 |
| AT4G36960.2 | Thale cress | cytosol | 10.95 | 10.03 |
| AT4G26650.1 | Thale cress | nucleus | 12.68 | 9.67 |
| AT5G55550.10 | Thale cress | nucleus | 12.39 | 8.48 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:816744 | ProteinID:AEC07261.1 | ArrayExpress:AT2G22090 | EnsemblPlantsGene:AT2G22090 |
| RefSeq:AT2G22090 | TAIR:AT2G22090 | RefSeq:AT2G22090-TAIR-G | EnsemblPlants:AT2G22090.2 | TAIR:AT2G22090.2 | Unigene:At.25483 |
| UniProt:F4IIL5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0017091 | GO:GO:0048255 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_850021.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44578 | PANTHER:PTHR44578:SF5 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | Symbol:UBA1A | UniParc:UPI000017A786 | SEG:seg |
Description
UBA1ARNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4IIL5]
Coordinates
chr2:-:9389000..9390506
Molecular Weight (calculated)
36738.2 Da
IEP (calculated)
8.914
GRAVY (calculated)
-0.514
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTLDKSKK RKLVKSKSTN FDKKQKINKQ QQQPESSTPY SSSSSSSDSS DSESDNEFDP EELRELLQPY SKDQLVDLVC SASRIGSSIY SAVVEAADRD
101: VTHRKIFVYG LPWETTRETL VGVFEGYGEI EECTVVIDKA TGKAKGFGFV MFKTRKGAKE ALKEPKKRIL NRTATCQLAS MGPAASGKGH DQPGPVKISM
201: GSMANHGQPQ QQQVQGQHVF NGGGMAASPF MLGNQYHPLY GAGMLGNPAL AAAAAAGGGY MYPMLAGALA HGGLGSDMVQ SSQMGGIGVD PSVGAAGLSA
301: LGSYFRGQSL PSTYPDSDAG GKRGTGKDSD AGGSSFHGYS NYSWYVH
101: VTHRKIFVYG LPWETTRETL VGVFEGYGEI EECTVVIDKA TGKAKGFGFV MFKTRKGAKE ALKEPKKRIL NRTATCQLAS MGPAASGKGH DQPGPVKISM
201: GSMANHGQPQ QQQVQGQHVF NGGGMAASPF MLGNQYHPLY GAGMLGNPAL AAAAAAGGGY MYPMLAGALA HGGLGSDMVQ SSQMGGIGVD PSVGAAGLSA
301: LGSYFRGQSL PSTYPDSDAG GKRGTGKDSD AGGSSFHGYS NYSWYVH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.