Factsheet for GSMUA_Achr9P12880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P17700_001	Banana	cytosol	18.7	46.24
VIT_12s0057g01280.t01	Wine grape	nucleus	48.7	43.41
VIT_19s0015g00920.t01	Wine grape	nucleus	54.78	36.21
GSMUA_Achr1P19260_001	Banana	nucleus	50.87	34.62
GSMUA_AchrUn_...	Banana	cytosol	49.13	34.35
VIT_18s0117g00150.t01	Wine grape	nucleus	53.48	34.26
GSMUA_Achr10P...	Banana	nucleus	36.09	33.47
AT3G13224.2	Thale cress	nucleus	51.3	32.96
GSMUA_Achr1P09440_001	Banana	cytosol	47.83	32.45
Bra039380.1-P	Field mustard	nucleus	50.43	32.04
CDY24201	Canola	nucleus	50.43	32.04
CDY43360	Canola	nucleus	50.43	32.04
PGSC0003DMT400044868	Potato	nucleus	47.39	31.87
KRH17717	Soybean	nucleus	48.26	31.53
Solyc07g045240.2.1	Tomato	nucleus	46.96	31.49
HORVU7Hr1G060930.1	Barley	plasma membrane	48.26	31.36
GSMUA_Achr10P...	Banana	nucleus	45.22	31.23
TraesCS7A01G282600.1	Wheat	cytosol	47.39	31.14
TraesCS7D01G281300.1	Wheat	nucleus	47.83	30.99
TraesCS7B01G178300.1	Wheat	nucleus	47.83	30.9
Zm00001d052820_P001	Maize	extracellular, mitochondrion, plasma membrane	50.43	30.29
GSMUA_Achr7P13480_001	Banana	nucleus	43.04	29.38
GSMUA_Achr8P25380_001	Banana	nucleus	46.96	28.5
OQU81002	Sorghum	nucleus	35.65	24.48
Os08t0492100-02	Rice	nucleus	44.78	23.62
GSMUA_Achr7P00730_001	Banana	cytosol	16.52	20.99
GSMUA_Achr4P09830_001	Banana	mitochondrion	13.48	20.53
PGSC0003DMT400044866	Potato	extracellular	46.96	20.22
GSMUA_Achr4P32300_001	Banana	nucleus	12.17	19.05
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	13.04	18.87
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	30.43	18.87
GSMUA_Achr1P10970_001	Banana	nucleus	35.22	18.58
GSMUA_Achr10P...	Banana	nucleus	33.48	17.5
GSMUA_Achr10P...	Banana	nucleus	33.91	16.96
GSMUA_Achr9P14920_001	Banana	plastid	13.04	16.95
GSMUA_Achr4P33100_001	Banana	nucleus	32.17	16.74
GSMUA_Achr6P10970_001	Banana	nucleus	33.48	15.4
GSMUA_Achr4P28100_001	Banana	nucleus	28.7	14.93
GSMUA_Achr2P14710_001	Banana	cytosol	22.61	14.48
GSMUA_Achr11P...	Banana	nucleus	16.09	13.96
GSMUA_Achr8P08440_001	Banana	nucleus	15.65	13.9
GSMUA_Achr3P21850_001	Banana	nucleus	15.65	13.74
GSMUA_Achr3P13820_001	Banana	cytosol	16.52	13.62
GSMUA_Achr9P12410_001	Banana	nucleus	19.57	13.43
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	15.65	13.33
GSMUA_Achr4P24260_001	Banana	cytosol	18.7	13.07
GSMUA_Achr10P...	Banana	nucleus	15.22	12.92
GSMUA_AchrUn_...	Banana	mitochondrion	13.48	12.86
GSMUA_Achr8P23460_001	Banana	nucleus	13.04	12.71
GSMUA_Achr10P...	Banana	nucleus	12.61	12.55
GSMUA_Achr5P17690_001	Banana	nucleus	21.3	12.13
GSMUA_Achr8P24330_001	Banana	nucleus, plastid	14.35	11.38
GSMUA_Achr5P05400_001	Banana	mitochondrion	13.04	11.36
GSMUA_Achr5P09550_001	Banana	nucleus	18.26	11.29
GSMUA_Achr3P02300_001	Banana	nucleus	33.04	11.19
GSMUA_AchrUn_...	Banana	nucleus	20.87	11.19
GSMUA_Achr4P09210_001	Banana	nucleus	20.87	10.86
GSMUA_Achr5P09540_001	Banana	nucleus	18.26	10.82
GSMUA_Achr6P15950_001	Banana	nucleus	21.74	10.73
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	19.57	10.37
GSMUA_Achr6P24180_001	Banana	cytosol	15.22	5.25

Protein Annotations

EnsemblPlants:GSMUA_Achr9P12880_001	EnsemblPlants:GSMUA_Achr9T12880_001	EnsemblPlantsGene:GSMUA_Achr9G12880_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:Hud_Sxl_RNA	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR45276	PFAM:PF00076	PFscan:PS50102	PRINTS:PR00961
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002964750	UniProt:M0TZU6	MapMan:35.1	:

Description

Putative Nuclear polyadenylated RNA-binding protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G12880_001]

Coordinates

chr9:-:8345960..8350634

Molecular Weight (calculated)

25892.5 Da

IEP (calculated)

7.763

GRAVY (calculated)

-0.605

Length

230 amino acids

Sequence
(BLAST)

001: MSRDTYAASV GSLPPLEPSP TKERKRNPSV EESGGHGIDG EERRDEAQGE RRSQRWIFVG GLHRDTIYGN QFFPATFTNH FGKYGDIIDA VIMMDKNTSR
101: LRGFGFVTFA NPSLVDNVIE DTHFINGKKL KFETKKTIPR GSLQSEDFKT KKIFVGGIRS TLTEDEFKNF FSKYGKVANH RIIRDHSTNR ACGFGFIIFD
201: SEEVVDDLLS EGNMIDLAGS KVEIKTAEPK

Best Arabidopsis Sequence Match ( AT3G13224.3 )
(BLAST)

001: MFCLEFLCCR KIFIGGLHKD TTNTVFNKHF GKYGEITDSV IMRDRHTGQP RGFGFITFAD PSVVDKVIED THVINGKQVE IKRTIPKGAG GNQSKDIKTK
101: KIFVGGIPST VTEDELKDFF AKYGNVVEHQ VIRDHETNRS RGFGFVIFDS EEVVDELLSK GNMIDMADTQ VEIKKAEPKK SLNRSPPSYG SHPRGRSSND
201: SYASYGGPYG GFDGGYGHPP GPIRSHGGPA SRYAGGYGYG RGSVGPEFGG GYNNYGGGSL GGYRNEPPLG YSSRFGPYGS GFGGEGYGRG GEGAYLGYPR
301: GGGEGYGGYG GPGYGGAYES GGPGGSYEGA GGPYGRGYSS SSRYHPYAR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.