CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011336_P002	Maize	nucleus	94.61	93.97
Zm00001d044469_P003	Maize	nucleus	93.03	92.62
HORVU3Hr1G053990.1	Barley	nucleus	85.62	86.39
TraesCS3B01G250700.1	Wheat	golgi	85.39	86.36
TraesCS3A01G220400.1	Wheat	nucleus	85.17	86.14
TraesCS3D01G232300.1	Wheat	nucleus	84.72	85.68
Os01t0614500-01	Rice	nucleus	85.17	84.79
GSMUA_Achr5P09550_001	Banana	nucleus	47.87	57.26
GSMUA_Achr5P09540_001	Banana	nucleus	44.94	51.55
VIT_19s0014g01570.t01	Wine grape	nucleus	51.69	51.22
KRH55109	Soybean	nucleus	50.56	50.68
KRH26210	Soybean	nucleus	49.66	50.57
CDY26001	Canola	nucleus	45.62	49.88
CDY55846	Canola	nucleus	44.49	49.38
Bra039664.1-P	Field mustard	nucleus	45.62	48.92
CDY24106	Canola	nucleus	45.39	48.91
CDY25867	Canola	nucleus	43.82	48.15
Bra038113.1-P	Field mustard	nucleus	44.27	47.58
AT3G15010.2	Thale cress	nucleus	43.15	47.52
KRH50169	Soybean	nucleus	40.22	46.61
KRH71299	Soybean	nucleus	39.55	45.83
PGSC0003DMT400008213	Potato	nucleus	43.6	45.75
Solyc02g021560.2.1	Tomato	nucleus	44.27	45.71
PGSC0003DMT400039802	Potato	nucleus	45.17	45.07
Solyc12g014210.1.1	Tomato	nucleus	33.71	44.78
PGSC0003DMT400032256	Potato	nucleus	24.94	35.58
PGSC0003DMT400031324	Potato	cytosol	10.56	33.81
KXG30578	Sorghum	nucleus	25.84	30.91
OQU90054	Sorghum	cytosol, mitochondrion, nucleus	5.39	30.38
EES02736	Sorghum	plastid	31.01	29.74
PGSC0003DMT400031418	Potato	extracellular, golgi	24.04	29.4
EES12939	Sorghum	nucleus	32.58	27.51
EER90058	Sorghum	plastid	15.06	23.43
EES10068	Sorghum	nucleus	22.47	23.2
EES06526	Sorghum	nucleus	20.22	23.02
EES01849	Sorghum	nucleus	13.48	22.9
OQU85520	Sorghum	nucleus, plastid	14.83	22.37
EER88542	Sorghum	nucleus	19.55	21.01
EES01076	Sorghum	nucleus	16.4	20.92
KXG30724	Sorghum	plastid	14.38	20.65
EES02078	Sorghum	nucleus	14.83	19.53
KXG34100	Sorghum	cytosol	15.73	19.44
EER95048	Sorghum	cytosol, nucleus, plastid	13.48	19.35
KXG38359	Sorghum	nucleus	19.1	18.76
OQU76075	Sorghum	plastid	14.83	18.7
OQU83904	Sorghum	nucleus	18.2	18.0
EER98147	Sorghum	nucleus	17.98	17.66
EER96020	Sorghum	nucleus	17.98	17.58
EER97452	Sorghum	nucleus	18.2	17.2
EER95824	Sorghum	cytosol	14.38	16.8
KXG37469	Sorghum	cytosol	10.56	15.51
OQU81002	Sorghum	nucleus	11.24	14.93

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8084824	UniProt:C5XR08	EnsemblPlants:EES03272	ProteinID:EES03272
ProteinID:EES03272.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006950
GO:GO:0006952	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009058
GO:GO:0009693	GO:GO:0009987	GO:GO:0010150	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
ProteinID:OQU87165.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3003G219400	SUPFAM:SSF54928	UniParc:UPI0001A84FA6	RefSeq:XP_002458152.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:55469139..55475224

Molecular Weight (calculated)

44376.6 Da

IEP (calculated)

8.813

GRAVY (calculated)

-0.195

Length

445 amino acids

Sequence
(BLAST)

001: MDPFSKKRKP DENGAVTASP AGGAATLGLT RDDVLRLLEP LSRDQLADIA AAAALVSAHA LDAVRAAADR DPALRKLFVR GLGWETTSDS LRAIFSAYGD
101: LEEAVVITDK TTGRSKGYGF VTFRHADSAV LALKEPSKKI DGRMTVTQLA AAGSAGGPSG GAAGSGGAPV ADVALRKIFV GNVPADMPSE RLLAHFASYG
201: EIEEGPLGFD KQTGKFRGFA LFVYKTPEGA QASLVDTVKV IDGHQLVCKL AIEGKKAKQG QSQQSGPGNQ QQQQMLQGGP QDMQGGLGLG SQMGAQYGGP
301: GSGMPSFGFG GVGGGFGGPN PYGNMPSSMG GGGAGGLGSM GGQVPTGLAG AGAGAFGPGG LGGGSFGGSS QFGAAGMGAY GGLGMGGGSM YRMQQGALPA
401: GAFGEGGNYP LPGSGFRGQD PQGGISPPGP GARAPPMYPN VPPYF

Best Arabidopsis Sequence Match ( AT2G41060.2 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.