CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034200_P001	Maize	nucleus	39.93	70.76
Zm00001d034201_P001	Maize	nucleus	58.42	70.52
EER95824	Sorghum	cytosol	39.93	31.76
OQU90054	Sorghum	cytosol, mitochondrion, nucleus	7.92	30.38
GSMUA_Achr4P28100_001	Banana	nucleus	30.69	21.04
KXG38359	Sorghum	nucleus	30.69	20.53
GSMUA_Achr4P32300_001	Banana	nucleus	9.57	19.73
EER98147	Sorghum	nucleus	29.04	19.43
EER96020	Sorghum	nucleus	29.04	19.34
GSMUA_Achr7P00730_001	Banana	cytosol	11.55	19.34
EER97452	Sorghum	nucleus	29.7	19.11
EES01076	Sorghum	nucleus	21.45	18.62
EES06526	Sorghum	nucleus	22.77	17.65
EER88542	Sorghum	nucleus	24.09	17.63
OQU83904	Sorghum	nucleus	25.08	16.89
KXG34100	Sorghum	cytosol	19.47	16.39
OQU81002	Sorghum	nucleus	16.5	14.93
EES01849	Sorghum	nucleus	11.88	13.74
KXG30724	Sorghum	plastid	12.87	12.58
EER90058	Sorghum	plastid	11.22	11.89
EES03272	Sorghum	nucleus	15.51	10.56
KXG30578	Sorghum	nucleus	12.87	10.48
OQU76075	Sorghum	plastid	12.21	10.48
OQU85520	Sorghum	nucleus, plastid	9.9	10.17
EES02078	Sorghum	nucleus	11.22	10.06
EES12939	Sorghum	nucleus	16.5	9.49
EER95048	Sorghum	cytosol, nucleus, plastid	9.57	9.35
EES02736	Sorghum	plastid	13.53	8.84
EES10068	Sorghum	nucleus	10.89	7.66
CDX69277	Canola	mitochondrion	2.97	4.84

Protein Annotations

EnsemblPlants:KXG37469	EnsemblPlantsGene:SORBI_3001G075800	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44291	PFAM:PF00076	PFscan:PS50102	ProteinID:KXG37469	ProteinID:KXG37469.1	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00081ADD80	UniProt:A0A1B6QHS8	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr1:-:5813441..5817349

Molecular Weight (calculated)

34599.9 Da

IEP (calculated)

8.505

GRAVY (calculated)

-0.673

Length

303 amino acids

Sequence
(BLAST)

001: MEKKEHEPRK LFIGGIPRVG LTADMVRGHF ARYGHVVEAL VMAYPDGFGR GFGFVEFEDE EAVLRALDSK ESDMHDAFFN CRVDVKRAEK KQETRSAQTS
101: TTSSSNGDLK VFVGGLGDNV TKDHLIDYFE RFGTITDVVM ISHRDTRKPR GFGFVTFDSK EATVKVLKDR FHYLNGIKVE TKNAEPRYQR RYQNGHHYDS
201: MNMVKGGMYS PHSRYYDSMD MAKGGMYSPH TLLYVPYYNG PYLAYPYSYP YHYTPMDYGY MGNQMDNTYD SRLSHVKGSQ QKIGIPGSTC VKSDLAKSDS
301: NLL

Best Arabidopsis Sequence Match ( AT4G14300.1 )
(BLAST)

001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q

Arabidopsis Description

RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.