Factsheet for GSMUA_Achr2P04570_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P01580_001
GSMUA_Achr1P19000_001
GSMUA_Achr3P21850_001
GSMUA_Achr4P04970_001
GSMUA_Achr4P05170_001
GSMUA_Achr4P24050_001
GSMUA_Achr5P17690_001
GSMUA_Achr6P17510_001
GSMUA_Achr6P24180_001
GSMUA_Achr7P11200_001
GSMUA_Achr7P23040_001
GSMUA_Achr8P08440_001
GSMUA_Achr9P24280_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	GSMUA_Achr10P...	AT1G33470.1	21798944
AT5G61380.1	GSMUA_Achr3P21850_001	AT1G33470.1	21798944
AT5G61380.1	GSMUA_Achr6P17510_001	AT1G33470.1	21798944
AT5G61380.1	GSMUA_Achr6P24180_001	AT1G33470.1	21798944
AT5G61380.1	GSMUA_Achr8P08440_001	AT1G33470.1	21798944
AT5G61380.1	GSMUA_Achr7P11200_001	AT1G68050.1	14654842
AT5G61380.1	GSMUA_Achr5P17690_001	AT2G33410.1	21798944
AT5G61380.1	GSMUA_Achr1P19000_001	AT2G46970.1	11828029
AT5G61380.1	GSMUA_Achr1P01580_001	AT3G16980.1	21798944
AT5G61380.1	GSMUA_Achr4P24050_001	AT3G16980.1	21798944
AT5G61380.1	GSMUA_Achr7P23040_001	AT3G24650.1	10743655
AT5G61380.1	GSMUA_AchrUn_...	AT3G24650.1	10743655
AT5G61380.1	GSMUA_Achr4P04970_001	AT5G24470.1	20407420
AT5G61380.1	GSMUA_Achr4P05170_001	AT5G24470.1	20407420
AT5G61380.1	GSMUA_Achr9P24280_001	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P19550_001	Banana	nucleus	71.58	74.57
GSMUA_Achr10P...	Banana	nucleus	70.13	71.03
VIT_17s0000g06570.t01	Wine grape	nucleus	49.73	49.55
EES05438	Sorghum	nucleus	46.63	48.85
Zm00001d017241_P002	Maize	nucleus	45.9	48.74
HORVU6Hr1G057630.1	Barley	nucleus	46.08	48.47
Os02t0618200-01	Rice	nucleus	45.72	48.46
TraesCS6B01G253900.1	Wheat	nucleus	45.36	48.26
Solyc06g069690.2.1	Tomato	nucleus	41.89	45.82
KRH63298	Soybean	nucleus	46.45	45.54
KRH54582	Soybean	nucleus	46.08	45.34
Zm00001d051114_P001	Maize	nucleus	44.81	45.05
PGSC0003DMT400083086	Potato	nucleus	44.99	44.99
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	46.27	44.88
PGSC0003DMT400050252	Potato	nucleus	44.99	44.83
KRH56889	Soybean	nucleus	46.45	44.35
Solyc03g115770.2.1	Tomato	nucleus	44.44	44.2
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	44.99	43.95
VIT_17s0000g06520.t01	Wine grape	cytosol	12.57	43.4
Bra035933.1-P	Field mustard	nucleus	40.07	43.22
CDX87210	Canola	nucleus	39.34	43.11
Zm00001d003811_P001	Maize	cytosol	24.95	42.55
KRH03510	Soybean	nucleus	44.63	42.31
CDY02151	Canola	nucleus	40.62	40.77
Zm00001d043140_P001	Maize	cytosol	22.4	40.46
Zm00001d018818_P001	Maize	cytosol	22.4	40.46
CDY64140	Canola	nucleus	40.98	39.27
Zm00001d044406_P001	Maize	cytosol	21.68	39.14
Bra012964.1-P	Field mustard	nucleus	40.98	39.06
VIT_17s0000g06560.t01	Wine grape	plastid	9.11	35.97
AT5G61380.1	Thale cress	nucleus	40.44	35.92
Zm00001d005366_P001	Maize	cytosol	25.87	26.2
GSMUA_Achr9P24280_001	Banana	nucleus	21.13	17.37
GSMUA_Achr4P04970_001	Banana	nucleus	20.58	17.33
GSMUA_Achr9P08940_001	Banana	nucleus	20.58	17.17
GSMUA_Achr2P06760_001	Banana	nucleus	20.22	16.67
GSMUA_Achr8P01990_001	Banana	cytosol, nucleus, plastid	21.68	16.08
GSMUA_AchrUn_...	Banana	nucleus	22.04	15.8
GSMUA_Achr4P05170_001	Banana	nucleus	19.49	13.99
GSMUA_Achr9P04240_001	Banana	nucleus	19.85	13.85

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr2G04570_001	EnsemblPlants:GSMUA_Achr2P04570_001
EnsemblPlants:GSMUA_Achr2T04570_001	InterPro:IPR001789	InterPro:IPR010402	UniProt:M0S548	PFAM:PF00072	PFAM:PF06203
PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF1	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI000295C169	SEG:seg	:	:	:

Description

Two-component response regulator-like PRR1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G04570_001]

Coordinates

chr2:-:9952042..9955282

Molecular Weight (calculated)

60742.2 Da

IEP (calculated)

5.460

GRAVY (calculated)

-0.470

Length

549 amino acids

Sequence
(BLAST)

001: MGRERVEEDE DEGWRCLNEG DGGGGGDAAG QRFFDRSKVR ILLCDNDPKS SQEILQLLLK CSYQVTSARS ARQVIDVLNA QGSEIDIILA EVELPMAKGL
101: KMLKYIARNK DLRRIPIIIM SAQDEVSVVV KCLRLGAADY LMKPLRTNEL LNLWTHMWRR RRMLGLTEKD VFRHDFEIIF SDPSDANTNS ITLLSDDTDE
201: KPSMGTNPEL NLSNLPETES NVSPVEPVCN NLLGDVQNIP RDGDRAGGIF SLPKKTELKV GGSSAFLTYV KSSASSRMPC IDVDVNSAPS EPSNREESSL
301: AVGDTARCNS KLVPESYIGG NGTPTSKNIC NMKDFQTPPE FPTLCVSSST EQQPQLRNEV LSDGSGIPPI FSLPFYYPGV MDQNILCSHG QLFQGSLNDV
401: QAHPAPALLP HYGVVPRMPL IPSFPYQTFG INMQSGHVAA PNLSSSMTTP SVLEVKPGRI EKRAAALVKF RQKRKDRCFD KKIRYVNRKR LAEKRPRVRG
501: QFVKQVNNVD VNQNVLGGGD GEFGDYEDDE PTSKELELIS SPEQNASDC

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.