Factsheet for Zm00001d044406_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006212_P002
Zm00001d007445_P001
Zm00001d008205_P001
Zm00001d009215_P001
Zm00001d012238_P003
Zm00001d014058_P002
Zm00001d016258_P001
Zm00001d021291_P002
Zm00001d022141_P007
Zm00001d024783_P001
Zm00001d032739_P001
Zm00001d040536_P005
Zm00001d042042_P001
Zm00001d042396_P003
Zm00001d042641_P001
Zm00001d053091_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	Zm00001d012238_P003	AT1G33470.1	21798944
AT5G61380.1	Zm00001d042042_P001	AT1G33470.1	21798944
AT5G61380.1	Zm00001d042641_P001	AT1G33470.1	21798944
AT5G61380.1	Zm00001d007445_P001	AT1G68050.1	14654842
AT5G61380.1	Zm00001d053091_P001	AT1G68050.1	14654842
AT5G61380.1	Zm00001d014058_P002	AT2G33410.1	21798944
AT5G61380.1	Zm00001d032739_P001	AT2G33410.1	21798944
AT5G61380.1	Zm00001d008205_P001	AT2G46970.1	11828029
AT5G61380.1	Zm00001d024783_P001	AT2G46970.1	11828029
AT5G61380.1	Zm00001d040536_P005	AT2G46970.1	11828029
AT5G61380.1	Zm00001d009215_P001	AT3G16980.1	21798944
AT5G61380.1	Zm00001d022141_P007	AT3G16980.1	21798944
AT5G61380.1	Zm00001d042396_P003	AT3G24650.1	10743655
AT5G61380.1	Zm00001d006212_P002	AT5G24470.1	20407420
AT5G61380.1	Zm00001d016258_P001	AT5G24470.1	20407420
AT5G61380.1	Zm00001d021291_P002	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018818_P001	Maize	cytosol	98.03	98.03
Zm00001d043140_P001	Maize	cytosol	97.7	97.7
Zm00001d003811_P001	Maize	cytosol	98.03	92.55
Zm00001d005366_P001	Maize	cytosol	95.07	53.32
Zm00001d051114_P001	Maize	nucleus	89.8	50.0
Zm00001d017241_P002	Maize	nucleus	83.55	49.13
EES05438	Sorghum	nucleus	82.89	48.09
Os02t0618200-01	Rice	nucleus	72.04	42.28
TraesCS6B01G253900.1	Wheat	nucleus	64.14	37.79
HORVU6Hr1G057630.1	Barley	nucleus	64.8	37.74
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	64.8	35.05
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	64.14	34.45
KRH54582	Soybean	nucleus	39.8	21.68
GSMUA_Achr2P04570_001	Banana	nucleus	39.14	21.68
KRH63298	Soybean	nucleus	39.47	21.43
GSMUA_Achr10P...	Banana	nucleus	36.84	20.66
KRH56889	Soybean	nucleus	38.49	20.35
GSMUA_Achr9P19550_001	Banana	nucleus	35.2	20.3
KRH03510	Soybean	nucleus	38.16	20.03
VIT_17s0000g06570.t01	Wine grape	nucleus	35.53	19.6
Solyc06g069690.2.1	Tomato	nucleus	30.26	18.33
Solyc03g115770.2.1	Tomato	nucleus	32.89	18.12
Bra035933.1-P	Field mustard	nucleus	30.26	18.07
PGSC0003DMT400050252	Potato	nucleus	32.57	17.97
CDX87210	Canola	nucleus	29.61	17.96
PGSC0003DMT400083086	Potato	nucleus	32.24	17.85
CDY02151	Canola	nucleus	30.59	17.0
AT5G61380.1	Thale cress	nucleus	34.21	16.83
CDY64140	Canola	nucleus	30.59	16.23
Bra012964.1-P	Field mustard	nucleus	30.59	16.15
Zm00001d016258_P001	Maize	cytosol	9.87	14.49
VIT_17s0000g06520.t01	Wine grape	cytosol	6.91	13.21
Zm00001d007240_P001	Maize	nucleus	17.11	8.78
Zm00001d047761_P005	Maize	nucleus	18.75	7.44
Zm00001d052781_P005	Maize	nucleus	16.78	7.35
Zm00001d006212_P002	Maize	nucleus	15.13	7.28
Zm00001d004875_P002	Maize	nucleus	16.12	7.05
Zm00001d021291_P002	Maize	mitochondrion, plastid	15.13	6.77
VIT_17s0000g06560.t01	Wine grape	plastid	0.33	0.72

Protein Annotations

EnsemblPlants:Zm00001d044406_P001	EnsemblPlants:Zm00001d044406_T001	EnsemblPlantsGene:Zm00001d044406	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:CheY-like_superfamily
InterPro:IPR001789	InterPro:Sig_transdc_resp-reg_receiver	PANTHER:PTHR43874	PANTHER:PTHR43874:SF1	PFscan:PS50110	ProteinID:ONM41076.1
SUPFAM:SSF52172	UniParc:UPI0008429E70	UniProt:A0A1D6NLH9	MapMan:27.1.3	:	:

Description

Two-component response regulator-like APRR1

Coordinates

chr3:-:227343296..227344737

Molecular Weight (calculated)

34155.5 Da

IEP (calculated)

5.207

GRAVY (calculated)

-0.720

Length

304 amino acids

Sequence
(BLAST)

001: MSNRDEVSVF VKCLRLGAAE YLVKPLRTNE LLNLWTHVWQ RRRMLGLPKK NFFNDNFELV LSEPSDANTN STTLLSDETD DRPKGNTNQE TGTSKQLEYE
101: SNPLVAEPDQ REKMEGVPGS ALDASQKSSP RRVFSRPIKT NLRVAESSAF LAYVKSSTPA TSSFDSELQR GGSRLDSLDN QGNCSSATDR SDTGTDVNIR
201: NKEAFEMPAQ YPMVWFSSSN MHMERSSEGH NDTSGTPPAY HFPFYYPGMV EHNMALSSAQ DFQANINNAQ AHTPQEGTFK ICHYAGELFY MQHDSGPDWL
301: IFIP

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.