Factsheet for Zm00001d040536_P005

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003811_P001
Zm00001d005366_P001
Zm00001d017241_P002
Zm00001d018818_P001
Zm00001d043140_P001
Zm00001d044406_P001
Zm00001d051114_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	Zm00001d003811_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d005366_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d017241_P002	AT5G61380.1	11828029
AT2G46970.1	Zm00001d018818_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d043140_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d044406_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d051114_P001	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32305	Sorghum	nucleus	84.83	79.64
Zm00001d008205_P001	Maize	nucleus	76.19	67.71
Os01t0286100-01	Rice	nucleus	67.72	60.28
Zm00001d024783_P001	Maize	nucleus	38.27	42.97
VIT_07s0005g02510.t01	Wine grape	nucleus	14.46	41.0
KRH69138	Soybean	cytosol, nucleus, vacuole	9.7	30.56
GSMUA_Achr5P18390_001	Banana	nucleus	32.63	30.53
Zm00001d002288_P002	Maize	nucleus	10.76	28.5
VIT_14s0060g00260.t01	Wine grape	nucleus	35.45	28.35
Bra020017.1-P	Field mustard	nucleus	23.46	26.92
Zm00001d026317_P003	Maize	nucleus, plastid	11.11	26.58
CDY64745	Canola	nucleus	23.46	26.49
CDX94963	Canola	nucleus	23.1	26.31
CDY06358	Canola	nucleus	22.57	26.07
KRH33733	Soybean	nucleus	31.75	26.05
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	27.16	25.97
Bra031668.1-P	Field mustard	nucleus	22.4	25.81
Zm00001d034298_P001	Maize	nucleus	19.05	25.59
CDY22636	Canola	nucleus	22.05	25.46
KRG90443	Soybean	nucleus	31.92	25.07
AT1G09530.3	Thale cress	nucleus	23.1	25.0
KRH68390	Soybean	nucleus	27.51	25.0
Zm00001d031044_P001	Maize	nucleus	17.46	24.81
Solyc01g102300.2.1	Tomato	nucleus	31.22	24.76
PGSC0003DMT400047079	Potato	nucleus	30.51	24.43
Zm00001d018416_P001	Maize	mitochondrion	14.11	24.24
KRG96663	Soybean	nucleus	26.81	24.01
Zm00001d033267_P001	Maize	nucleus	22.22	22.99
Zm00001d013130_P001	Maize	nucleus	15.52	22.74
KRH33663	Soybean	nucleus	17.99	22.72
AT2G46970.1	Thale cress	nucleus	16.58	22.6
Bra003483.1-P	Field mustard	nucleus	12.17	22.48
CDX67873	Canola	nucleus	12.17	22.48
AT3G62090.2	Thale cress	nucleus	14.11	22.04
CDX80064	Canola	nucleus	15.52	22.0
Bra004489.1-P	Field mustard	nucleus	15.52	22.0
Zm00001d045212_P001	Maize	nucleus	12.87	21.53
KRH68348	Soybean	nucleus	19.4	21.28
CDY66254	Canola	nucleus	14.81	21.0
CDY65446	Canola	nucleus	12.17	20.85
Bra000436.1-P	Field mustard	nucleus	14.64	20.54
CDX83349	Canola	nucleus	14.64	20.54
Zm00001d013073_P002	Maize	nucleus	10.05	20.0
KRG96615	Soybean	nucleus	18.17	19.88
Zm00001d018967_P001	Maize	nucleus	9.7	19.3
CDY50911	Canola	nucleus	8.99	18.82
Zm00001d020490_P001	Maize	nucleus	11.29	18.6
CDY11401	Canola	extracellular	11.29	18.18
CDX76616	Canola	extracellular	11.29	17.88
Zm00001d029898_P001	Maize	nucleus	15.17	17.55
Zm00001d018374_P001	Maize	nucleus	11.99	17.48
Zm00001d052038_P001	Maize	nucleus	10.05	17.07
Zm00001d005750_P002	Maize	mitochondrion	11.82	16.38
Zm00001d045107_P001	Maize	nucleus	9.52	16.27
Zm00001d000291_P001	Maize	nucleus	13.05	15.78
Bra007660.1-P	Field mustard	nucleus	11.29	15.17
Zm00001d016873_P001	Maize	nucleus	10.76	12.47
Zm00001d045046_P001	Maize	nucleus	9.17	10.81
Zm00001d037098_P003	Maize	nucleus	9.17	9.98
Zm00001d029897_P001	Maize	nucleus	3.7	7.69

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	UniProt:A0A060D2B6	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EMBL:KJ727969	ProteinID:ONM31506.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF284
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002217A54	EnsemblPlantsGene:Zm00001d040536	EnsemblPlants:Zm00001d040536_P005	EnsemblPlants:Zm00001d040536_T005
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

bHLH-transcription factor 68Transcription factor PIF4

Coordinates

chr3:-:48598998..48602327

Molecular Weight (calculated)

60407.6 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.478

Length

567 amino acids

Sequence
(BLAST)

001: MSDSNDFVEL LWENGQAVVH GRRKQHPQAA FPPFTCGAAS SSRAQENQPG TTDPVSLFKT GGLFADFSSG LDAARGNGDL DDTVPWIHCP IVEEDSAAPA
101: PALAEGYSPD FFSELHAAAL AAAAAETNLS PLPPPVQHNR STPVATTSRG PEPSKEAPRI PVPGPGSRPE PQSEFAATRK PRPESGGEGL MNFSLFSRPA
201: ALVRASLQRP PPPQTGTDKV SNVTTSTRVE STVLQSASGP RIAPVFTDQR TAWSQSKEVR FSCAPALAAG NLHQDMPLGR PGNNMTPQGK METKKACEVA
301: VATPSLCSGN GESWREQKRK SQAECSASQD DDLDDESGGM RGSGGRGTKR SRTAEVHNLS ERRRRDRINE KMRALQELIP NCNKIDKASM LDEAIEYLKT
401: LQLQVQMMAM GSGLCIPPML LPRAMQLQIP SIAHFHHLGM GLGYGMGVLD MNSTAAVPFQ PIPGAHYTCP MIPGTPPQGL GIGMPGTNTM PVFGLPGQAI
501: HPSASSVQPF PSLAGLPVRP NLAPQVPAVM ANMVQEQQQG VATQQQQSLN NEAQQKANTG DPQILQK

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.