Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020017.1-P | Field mustard | nucleus | 91.77 | 92.51 |
| CDY64745 | Canola | nucleus | 93.17 | 92.43 |
| CDY22636 | Canola | nucleus | 78.71 | 79.84 |
| CDY06358 | Canola | nucleus | 78.31 | 79.43 |
| AT1G09530.3 | Thale cress | nucleus | 81.12 | 77.1 |
| CDY37185 | Canola | mitochondrion | 9.84 | 50.0 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 14.06 | 35.0 |
| CDY24734 | Canola | plastid | 8.63 | 30.28 |
| KRG96663 | Soybean | nucleus | 35.74 | 28.12 |
| CDY00603 | Canola | nucleus, plastid | 15.26 | 27.74 |
| CDY67566 | Canola | nucleus, plastid | 15.26 | 27.74 |
| CDY01438 | Canola | nucleus, plastid | 12.05 | 27.52 |
| CDY12804 | Canola | nucleus, plastid | 11.85 | 27.31 |
| KRH68390 | Soybean | nucleus | 33.73 | 26.92 |
| PGSC0003DMT400047079 | Potato | nucleus | 36.55 | 25.71 |
| Solyc01g102300.2.1 | Tomato | nucleus | 35.74 | 24.9 |
| CDY35224 | Canola | nucleus | 12.85 | 24.71 |
| CDY65390 | Canola | nucleus | 10.24 | 24.4 |
| Zm00001d024783_P001 | Maize | nucleus | 24.5 | 24.16 |
| CDX91917 | Canola | nucleus | 16.67 | 23.92 |
| CDX83214 | Canola | nucleus | 16.47 | 23.56 |
| Os05t0139100-01 | Rice | nucleus | 23.69 | 23.37 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 22.89 | 23.12 |
| Zm00001d040536_P005 | Maize | nucleus | 26.31 | 23.1 |
| CDY05725 | Canola | nucleus | 23.49 | 23.08 |
| KXG32305 | Sorghum | nucleus | 27.91 | 23.01 |
| CDX83509 | Canola | nucleus | 19.08 | 23.0 |
| CDY35220 | Canola | nucleus | 17.07 | 22.91 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 22.89 | 22.71 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 22.89 | 22.71 |
| CDY31989 | Canola | nucleus | 21.69 | 22.69 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 23.09 | 22.68 |
| CDY14866 | Canola | nucleus | 18.27 | 22.58 |
| CDX80064 | Canola | nucleus | 18.07 | 22.5 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 26.71 | 22.43 |
| CDY30375 | Canola | nucleus | 18.27 | 22.41 |
| CDY20289 | Canola | nucleus | 9.44 | 22.27 |
| CDY66254 | Canola | nucleus | 17.87 | 22.25 |
| CDY29961 | Canola | nucleus | 18.07 | 22.11 |
| CDX70453 | Canola | nucleus | 18.07 | 22.11 |
| CDX74328 | Canola | nucleus | 17.07 | 21.96 |
| CDY06870 | Canola | nucleus | 19.88 | 21.76 |
| CDY42809 | Canola | nucleus | 18.07 | 21.74 |
| Os01t0286100-01 | Rice | nucleus | 27.51 | 21.51 |
| CDY44048 | Canola | nucleus, plastid | 14.66 | 21.41 |
| CDY21498 | Canola | nucleus | 16.47 | 21.19 |
| CDX67873 | Canola | nucleus | 13.05 | 21.17 |
| Zm00001d008205_P001 | Maize | nucleus | 27.11 | 21.16 |
| CDY06026 | Canola | nucleus | 18.67 | 21.04 |
| CDY22448 | Canola | nucleus, plastid | 14.86 | 21.02 |
| CDX71916 | Canola | nucleus | 18.67 | 20.99 |
| CDX75629 | Canola | nucleus | 14.46 | 20.81 |
| CDX69281 | Canola | nucleus, plastid | 14.46 | 20.63 |
| CDY65446 | Canola | nucleus | 13.65 | 20.54 |
| CDX83349 | Canola | nucleus | 16.47 | 20.3 |
| CDY06865 | Canola | nucleus | 14.06 | 19.5 |
| CDY50911 | Canola | nucleus | 10.44 | 19.19 |
| KXG21255 | Sorghum | nucleus | 25.9 | 18.75 |
| CDX68710 | Canola | nucleus | 12.05 | 18.35 |
| CDY28232 | Canola | nucleus | 12.05 | 18.35 |
| CDY06867 | Canola | nucleus | 17.67 | 18.26 |
| CDY55014 | Canola | nucleus | 10.44 | 17.99 |
| CDY11836 | Canola | nucleus | 10.24 | 17.83 |
| CDY02785 | Canola | nucleus | 10.44 | 17.57 |
| CDY32733 | Canola | nucleus | 10.44 | 17.22 |
| CDY62262 | Canola | nucleus | 10.44 | 17.22 |
| CDX88653 | Canola | nucleus | 10.24 | 17.0 |
| CDX76616 | Canola | extracellular | 12.05 | 16.76 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.83 | 16.75 |
| CDY46133 | Canola | nucleus | 6.22 | 16.23 |
| CDY11401 | Canola | extracellular | 11.45 | 16.19 |
| CDY34780 | Canola | nucleus | 10.64 | 15.68 |
| CDX76819 | Canola | nucleus | 10.64 | 15.59 |
| CDY21898 | Canola | nucleus | 9.24 | 15.28 |
| CDY18011 | Canola | nucleus | 9.24 | 15.13 |
| CDY22062 | Canola | nucleus | 9.24 | 15.13 |
| CDX91293 | Canola | nucleus | 9.04 | 15.1 |
| CDY35222 | Canola | nucleus | 17.47 | 15.08 |
| CDX97278 | Canola | nucleus | 9.04 | 15.05 |
| CDX90930 | Canola | nucleus | 9.24 | 14.84 |
| CDY18143 | Canola | nucleus | 9.04 | 14.71 |
| CDX89919 | Canola | nucleus | 9.04 | 14.47 |
| CDY46132 | Canola | endoplasmic reticulum | 4.82 | 13.64 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:A0A078E6G5 | EnsemblPlants:CDX94963 | ProteinID:CDX94963 |
| ProteinID:CDX94963.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00100449001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF284 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0001BA8666 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC05g07080D
Coordinates
chrLK031886:-:444337..446457
Molecular Weight (calculated)
54411.5 Da
IEP (calculated)
6.083
GRAVY (calculated)
-0.778
Length
498 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLFELFRLA NANVEYAQDE NPSPPVDEVV ELVWENGQIS TQSQSSRPRN IPPPQSIHQA RARELGNGPK ATMVDEIQMS VPSLMTGLSQ DDDLVPWLNP
101: HQSLDGYCSD LLRDASPVTV NEQETDAFPR RNNGNESAPA ASSSQFNGFD SHSLYGTGRA GDPVSQPAKP DRFSQRLEPL VTSNKTGLLN FSHFLRTAAL
201: AKTNNNPPGS KEKSPQSPPN VFQTRVLGAK DNEPKDNQKA CLVSEDSNRK EQESEKAVVC SSVGSGNSLD GPSESPLKRK HLDVQDIDCH SEDVEGESGD
301: GRKEAAPSRT SIGSKRSRSA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA IEYLKSLQLQ VQFMSMASGY FMPPVMFPPG MGHHYQAAAM
401: AMGMGMPYAM GLPDMSRGGP SVNNRPQFQV PGMQQPVAVA LPRVSAGGFY TGSEMNKSDD GSARDLSGTK DQTTTKDNNS LRPIKRKQTS SDQFCGSS
101: HQSLDGYCSD LLRDASPVTV NEQETDAFPR RNNGNESAPA ASSSQFNGFD SHSLYGTGRA GDPVSQPAKP DRFSQRLEPL VTSNKTGLLN FSHFLRTAAL
201: AKTNNNPPGS KEKSPQSPPN VFQTRVLGAK DNEPKDNQKA CLVSEDSNRK EQESEKAVVC SSVGSGNSLD GPSESPLKRK HLDVQDIDCH SEDVEGESGD
301: GRKEAAPSRT SIGSKRSRSA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA IEYLKSLQLQ VQFMSMASGY FMPPVMFPPG MGHHYQAAAM
401: AMGMGMPYAM GLPDMSRGGP SVNNRPQFQV PGMQQPVAVA LPRVSAGGFY TGSEMNKSDD GSARDLSGTK DQTTTKDNNS LRPIKRKQTS SDQFCGSS
001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
Arabidopsis Description
PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.