Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00050.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000560.1-P | Field mustard | nucleus | 96.38 | 96.13 |
| CDY21498 | Canola | nucleus | 95.61 | 95.61 |
| CDX91917 | Canola | nucleus | 84.24 | 93.95 |
| CDX83214 | Canola | nucleus | 83.72 | 93.1 |
| AT4G00050.1 | Thale cress | nucleus | 82.17 | 79.7 |
| CDY65390 | Canola | nucleus | 42.89 | 79.43 |
| VIT_15s0021g02690.t01 | Wine grape | nucleus | 58.14 | 48.39 |
| KRH75301 | Soybean | nucleus | 56.07 | 47.38 |
| KRG88937 | Soybean | nucleus | 56.85 | 47.31 |
| CDY37185 | Canola | mitochondrion | 11.89 | 46.94 |
| PGSC0003DMT400066807 | Potato | nucleus | 54.01 | 45.04 |
| Solyc10g018510.1.1 | Tomato | nucleus | 41.09 | 40.66 |
| Os10t0556200-01 | Rice | nucleus | 40.83 | 33.98 |
| TraesCS1B01G226200.2 | Wheat | nucleus | 39.53 | 33.63 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 40.05 | 33.41 |
| TraesCS1D01G215600.2 | Wheat | nucleus | 39.02 | 33.19 |
| Zm00001d029898_P001 | Maize | nucleus | 41.6 | 32.86 |
| TraesCS1A01G212700.1 | Wheat | nucleus | 38.5 | 32.75 |
| OQU92150 | Sorghum | nucleus | 43.67 | 31.47 |
| CDY24734 | Canola | plastid | 9.82 | 26.76 |
| CDY35224 | Canola | nucleus | 16.02 | 23.94 |
| CDY01438 | Canola | nucleus, plastid | 13.44 | 23.85 |
| CDY12804 | Canola | nucleus, plastid | 13.18 | 23.61 |
| CDY00603 | Canola | nucleus, plastid | 16.54 | 23.36 |
| CDY67566 | Canola | nucleus, plastid | 16.54 | 23.36 |
| CDY44048 | Canola | nucleus, plastid | 18.86 | 21.41 |
| CDX75629 | Canola | nucleus | 18.86 | 21.1 |
| CDY22448 | Canola | nucleus, plastid | 18.86 | 20.74 |
| CDX69281 | Canola | nucleus, plastid | 18.6 | 20.63 |
| CDY20289 | Canola | nucleus | 10.85 | 19.91 |
| CDY65446 | Canola | nucleus | 16.8 | 19.64 |
| CDY55014 | Canola | nucleus | 14.47 | 19.38 |
| CDY31989 | Canola | nucleus | 23.77 | 19.33 |
| CDY11836 | Canola | nucleus | 14.21 | 19.23 |
| CDX67873 | Canola | nucleus | 15.25 | 19.22 |
| CDX80064 | Canola | nucleus | 19.64 | 19.0 |
| CDY05725 | Canola | nucleus | 24.81 | 18.93 |
| CDX70453 | Canola | nucleus | 19.9 | 18.92 |
| CDY29961 | Canola | nucleus | 19.9 | 18.92 |
| CDY14866 | Canola | nucleus | 19.64 | 18.86 |
| CDY66254 | Canola | nucleus | 19.38 | 18.75 |
| CDY30375 | Canola | nucleus | 19.64 | 18.72 |
| CDY02785 | Canola | nucleus | 14.21 | 18.58 |
| CDX83349 | Canola | nucleus | 19.38 | 18.56 |
| CDY62262 | Canola | nucleus | 14.47 | 18.54 |
| CDY50911 | Canola | nucleus | 12.92 | 18.45 |
| CDY06870 | Canola | nucleus | 21.45 | 18.24 |
| CDY32733 | Canola | nucleus | 14.21 | 18.21 |
| CDY11401 | Canola | extracellular | 16.54 | 18.18 |
| CDX83509 | Canola | nucleus | 19.38 | 18.16 |
| CDX76616 | Canola | extracellular | 16.8 | 18.16 |
| CDY06865 | Canola | nucleus | 16.8 | 18.11 |
| CDX88653 | Canola | nucleus | 13.95 | 18.0 |
| CDY42809 | Canola | nucleus | 19.12 | 17.87 |
| CDY06026 | Canola | nucleus | 19.9 | 17.42 |
| CDX71916 | Canola | nucleus | 19.9 | 17.38 |
| CDX94963 | Canola | nucleus | 21.96 | 17.07 |
| CDY06358 | Canola | nucleus | 20.93 | 16.5 |
| CDY64745 | Canola | nucleus | 21.19 | 16.33 |
| CDY22636 | Canola | nucleus | 20.67 | 16.29 |
| CDX68710 | Canola | nucleus | 13.7 | 16.21 |
| CDY28232 | Canola | nucleus | 13.7 | 16.21 |
| CDY06867 | Canola | nucleus | 19.38 | 15.56 |
| CDY34780 | Canola | nucleus | 13.44 | 15.38 |
| CDY35220 | Canola | nucleus | 14.73 | 15.36 |
| CDX76819 | Canola | nucleus | 13.44 | 15.29 |
| CDX91293 | Canola | nucleus | 11.63 | 15.1 |
| CDY21898 | Canola | nucleus | 11.63 | 14.95 |
| CDY22062 | Canola | nucleus | 11.63 | 14.8 |
| CDY18011 | Canola | nucleus | 11.37 | 14.47 |
| CDX89919 | Canola | nucleus | 11.63 | 14.47 |
| CDX97278 | Canola | nucleus | 11.11 | 14.38 |
| CDY18143 | Canola | nucleus | 11.37 | 14.38 |
| CDX90930 | Canola | nucleus | 11.11 | 13.87 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 7.24 | 13.79 |
| CDY46133 | Canola | nucleus | 6.72 | 13.61 |
| CDY35222 | Canola | nucleus | 19.38 | 13.0 |
| CDY46132 | Canola | endoplasmic reticulum | 5.17 | 11.36 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078CH61 | EnsemblPlants:CDX74328 | ProteinID:CDX74328 | ProteinID:CDX74328.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00112124001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF173 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDF033 | InterPro:bHLH_dom | SEG:seg |
Description
BnaA03g27190D
Coordinates
chrLK031800:+:2208764..2212290
Molecular Weight (calculated)
42341.3 Da
IEP (calculated)
6.936
GRAVY (calculated)
-0.611
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQCVPNYHI DDTPAATVRS TKAADIPTLD YEVAELTWEN GQLGLHGLCP PRVPAPSKYS TGAGGTLESI VDQATRFPNP KPSDELVPSF HHRYSRVGMD
101: ALVPEQQSQP ATGVGSCSDG HPMDCGKRAR VAPEWSASGS QRLTIDTYGF TSTSLDDNSS SGGKPFPKTT NIDDHDSMEE EEEQKQTGGK SSASTKRSRA
201: AAIHNQSERK RRDKINQRMK TLQKLVPNSS KTDKASMLDE VIEYLKQLQA QVCMMSRMNM PSMMLPMAMQ QQQQQLQLNL MSSSMGLGLR MGMPGLGLVD
301: LSSMNRAATA TAPNIHANMM QNPFVPMTST SWDASSSIDP RFQSPLIPDP MSAFLACSSQ PTTMEAYSRM AALYQQMQQQ LPPSNPK
101: ALVPEQQSQP ATGVGSCSDG HPMDCGKRAR VAPEWSASGS QRLTIDTYGF TSTSLDDNSS SGGKPFPKTT NIDDHDSMEE EEEQKQTGGK SSASTKRSRA
201: AAIHNQSERK RRDKINQRMK TLQKLVPNSS KTDKASMLDE VIEYLKQLQA QVCMMSRMNM PSMMLPMAMQ QQQQQLQLNL MSSSMGLGLR MGMPGLGLVD
301: LSSMNRAATA TAPNIHANMM QNPFVPMTST SWDASSSIDP RFQSPLIPDP MSAFLACSSQ PTTMEAYSRM AALYQQMQQQ LPPSNPK
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.