Factsheet for TraesCS1B01G226200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00050.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT4G00050.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT4G00050.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT4G00050.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT4G00050.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT4G00050.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G215600.2	Wheat	nucleus	94.95	94.95
TraesCS1A01G212700.1	Wheat	nucleus	94.51	94.51
HORVU1Hr1G054260.3	Barley	nucleus	94.29	92.46
Os10t0556200-01	Rice	nucleus	66.59	65.16
Zm00001d029898_P001	Maize	nucleus	69.23	64.29
OQU92150	Sorghum	nucleus	72.09	61.08
CDY65390	Canola	nucleus	19.56	42.58
Bra037312.1-P	Field mustard	nucleus	19.56	42.58
CDX83214	Canola	nucleus	30.99	40.52
CDX91917	Canola	nucleus	30.55	40.06
CDX74328	Canola	nucleus	33.63	39.53
AT4G00050.1	Thale cress	nucleus	34.51	39.35
Bra000560.1-P	Field mustard	nucleus	33.41	39.18
CDY21498	Canola	nucleus	33.19	39.02
VIT_15s0021g02690.t01	Wine grape	nucleus	38.68	37.85
KRH75301	Soybean	nucleus	36.48	36.24
KRG88937	Soybean	nucleus	36.92	36.13
Solyc01g090790.2.1	Tomato	nucleus	36.26	35.56
PGSC0003DMT400066807	Potato	nucleus	35.82	35.13
Solyc10g018510.1.1	Tomato	nucleus	25.27	29.41
TraesCS2B01G483300.1	Wheat	nucleus	9.89	23.94
TraesCS6B01G411300.1	Wheat	nucleus	12.97	19.47
TraesCS5B01G422000.1	Wheat	nucleus	17.14	19.02
TraesCS2B01G273500.1	Wheat	nucleus	14.95	18.99
TraesCS5B01G054800.2	Wheat	nucleus	14.07	18.88
TraesCS7B01G026300.1	Wheat	nucleus	14.07	18.88
TraesCS5B01G380200.1	Wheat	nucleus	17.14	17.45
TraesCS6B01G391100.1	Wheat	nucleus	11.87	15.04
TraesCS5B01G445900.1	Wheat	nucleus	9.23	14.95
TraesCS1B01G100400.2	Wheat	nucleus	16.26	14.74
TraesCS5B01G224200.1	Wheat	nucleus	12.31	12.04
TraesCS7B01G062100.2	Wheat	nucleus	10.11	9.58

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0008150	GO:GO:0009506	GO:GO:0009567	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF173	SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:TraesCS1B01G226200	EnsemblPlants:TraesCS1B01G226200.2	InterPro:bHLH_dom
TIGR:cd00083	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:406040108..406049941

Molecular Weight (calculated)

48501.6 Da

IEP (calculated)

7.065

GRAVY (calculated)

-0.516

Length

455 amino acids

Sequence
(BLAST)

001: MNNQCVPSWD LDETVGAGLN PVSTRSAQRM ASGDSGLTGP VAMPMPDQYD EVAELTWEKG NIFWQGLLNR SVPKYPAAPA PAQMHAIGGA GDHRETLEAV
101: VGEAAARLSS QSTSHLGQPL PAAVAPWLGV GAPADGLVPC ARGDDQAEGG VRRKRARQVG EDGRVCASQG SAAPGRGESS LLTLEPCGTG ADDLCGFTTT
201: NNSTSLDHGS PETENTSFGG GASDSRCFSR RSQRDGLCDE AENVVIKGGA PMRSSISTKR SRAAAIHNES ERKRRDRINQ KMQTLQKLVP NSSKTDKASM
301: LDEVIDHLKQ LQATVQMMNR MSSMMMPMAM PQLAQMSVMA NMAQMAQMAQ MGLGMMNMAG PLAQPAYPGL TQPMMQASTP FVAMQPWNAG AGADRQKQSA
401: AVPDAYSAFL ACQAAQQNTQ QQQQAQPNGM EAYSRMMAMY QKLSQQQTRP GSSKE

Best Arabidopsis Sequence Match ( AT4G00050.1 )
(BLAST)

001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK

Arabidopsis Description

UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.