Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G014460.1 | |
| HORVU1Hr1G050960.7 | |
| HORVU5Hr1G124010.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00050.1 | HORVU0Hr1G014460.1 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | HORVU1Hr1G050960.7 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | HORVU5Hr1G124010.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G215600.2 | Wheat | nucleus | 92.46 | 94.29 |
| TraesCS1B01G226200.2 | Wheat | nucleus | 92.46 | 94.29 |
| TraesCS1A01G212700.1 | Wheat | nucleus | 92.24 | 94.07 |
| Os10t0556200-01 | Rice | nucleus | 65.95 | 65.81 |
| Zm00001d029898_P001 | Maize | nucleus | 67.46 | 63.88 |
| OQU92150 | Sorghum | nucleus | 70.69 | 61.08 |
| Bra037312.1-P | Field mustard | nucleus | 19.61 | 43.54 |
| CDY65390 | Canola | nucleus | 19.61 | 43.54 |
| CDX83214 | Canola | nucleus | 30.82 | 41.09 |
| CDX91917 | Canola | nucleus | 30.39 | 40.63 |
| CDX74328 | Canola | nucleus | 33.41 | 40.05 |
| Bra000560.1-P | Field mustard | nucleus | 33.19 | 39.69 |
| AT4G00050.1 | Thale cress | nucleus | 34.05 | 39.6 |
| CDY21498 | Canola | nucleus | 32.97 | 39.53 |
| VIT_15s0021g02690.t01 | Wine grape | nucleus | 37.93 | 37.85 |
| KRH75301 | Soybean | nucleus | 35.56 | 36.03 |
| KRG88937 | Soybean | nucleus | 35.99 | 35.91 |
| Solyc01g090790.2.1 | Tomato | nucleus | 35.78 | 35.78 |
| PGSC0003DMT400066807 | Potato | nucleus | 35.34 | 35.34 |
| Solyc10g018510.1.1 | Tomato | nucleus | 25.22 | 29.92 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 9.7 | 23.94 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 13.36 | 20.95 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 16.38 | 19.19 |
| HORVU5Hr1G011780.1 | Barley | nucleus | 13.79 | 18.77 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 13.58 | 18.64 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 14.01 | 17.96 |
| HORVU6Hr1G085500.3 | Barley | nucleus | 11.64 | 14.92 |
| HORVU5Hr1G093310.11 | Barley | nucleus | 17.46 | 14.81 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 15.73 | 14.81 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 9.27 | 13.78 |
| HORVU7Hr1G030250.5 | Barley | nucleus | 10.13 | 11.9 |
| HORVU5Hr1G065450.20 | Barley | nucleus | 9.91 | 9.87 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 9.7 | 9.36 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A287FN54 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009567 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | EnsemblPlantsGene:HORVU1Hr1G054260 | EnsemblPlants:HORVU1Hr1G054260.3 | InterPro:IPR011598 | InterPro:IPR036638 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF173 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000B4711A9 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:401397113..401413498
Molecular Weight (calculated)
49595.9 Da
IEP (calculated)
6.263
GRAVY (calculated)
-0.539
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: SVMNNQCVPR WDLDETVGAG LNPVPAGSAQ RMASGDSGLT EPVAMPMPDQ YDEVAELTWE KGNIFWQGLL NRSVPKYPAA PAPAQMHAIG GAGDHRETLE
101: AVVGEAAARL STQSTSHLGQ PLRAAAAPWL GVGAPADGLV PCARGDDPAE GDVQRKRARV VGEDGRVCAS QGSAAPGRGE SSLLTLEPCG TGADDLCGFT
201: TTNNSTSLDQ GSPETENTSF GGGASDSRCF SRRSQRDGLC DEAENVVVKG EAPMRSSIST KRSRAAAIHN ESERKRRDRI NQKMQTLQKL VPNSSKTDKA
301: SMLDEVIDHL KQLQATVQMM NRMSSMMMPM AMPQLAQMSV MTQMAQMAQM AQMGLGMMNM AAGPLAQPAY PGLAQPMMHP STPFVPMQPW NAGAGADRQK
401: QPAAAAVPDA YSAFLACQAA QQNAQQQQQQ QQQAQPNGME AYSRMMAMYQ KLGQQQTQPR SSKE
101: AVVGEAAARL STQSTSHLGQ PLRAAAAPWL GVGAPADGLV PCARGDDPAE GDVQRKRARV VGEDGRVCAS QGSAAPGRGE SSLLTLEPCG TGADDLCGFT
201: TTNNSTSLDQ GSPETENTSF GGGASDSRCF SRRSQRDGLC DEAENVVVKG EAPMRSSIST KRSRAAAIHN ESERKRRDRI NQKMQTLQKL VPNSSKTDKA
301: SMLDEVIDHL KQLQATVQMM NRMSSMMMPM AMPQLAQMSV MTQMAQMAQM AQMGLGMMNM AAGPLAQPAY PGLAQPMMHP STPFVPMQPW NAGAGADRQK
401: QPAAAAVPDA YSAFLACQAA QQNAQQQQQQ QQQAQPNGME AYSRMMAMYQ KLGQQQTQPR SSKE
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.