Factsheet for Os10t0556200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0854800-03
Os10t0577800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00050.1	Os03t0854800-03	AT1G32230.1	19548978
AT4G00050.1	Os10t0577800-01	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G226200.2	Wheat	nucleus	65.16	66.59
TraesCS1D01G215600.2	Wheat	nucleus	64.73	66.15
Zm00001d029898_P001	Maize	nucleus	69.68	66.12
HORVU1Hr1G054260.3	Barley	nucleus	65.81	65.95
TraesCS1A01G212700.1	Wheat	nucleus	64.52	65.93
OQU92150	Sorghum	nucleus	73.12	63.31
CDX91917	Canola	nucleus	31.61	42.36
CDX83214	Canola	nucleus	31.61	42.24
Bra037312.1-P	Field mustard	nucleus	18.92	42.11
CDY65390	Canola	nucleus	18.92	42.11
AT4G00050.1	Thale cress	nucleus	35.48	41.35
CDX74328	Canola	nucleus	33.98	40.83
Bra000560.1-P	Field mustard	nucleus	33.55	40.21
CDY21498	Canola	nucleus	32.69	39.28
VIT_15s0021g02690.t01	Wine grape	nucleus	38.92	38.92
KRG88937	Soybean	nucleus	37.2	37.2
KRH75301	Soybean	nucleus	36.34	36.9
Solyc01g090790.2.1	Tomato	nucleus	35.7	35.78
PGSC0003DMT400066807	Potato	nucleus	35.48	35.56
Solyc10g018510.1.1	Tomato	nucleus	25.16	29.92
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	12.47	29.44
Os04t0618600-01	Rice	nucleus	9.89	25.41
Os07t0182200-01	Rice	cytosol	7.31	25.0
Os02t0805250-00	Rice	nucleus	12.47	20.71
Os12t0610200-01	Rice	nucleus	19.35	20.22
Os03t0782500-01	Rice	nucleus	16.13	18.29
Os07t0143200-01	Rice	nucleus	15.48	17.39
Os03t0797600-01	Rice	nucleus	10.11	15.99
Os05t0139100-01	Rice	nucleus	16.99	15.64
Os06t0184000-00	Rice	nucleus	12.9	15.08
Os01t0286100-01	Rice	nucleus	19.78	14.44
Os02t0795800-00	Rice	endoplasmic reticulum, mitochondrion, nucleus, plastid	8.39	13.93
Os06t0193400-01	Rice	nucleus	11.4	11.09
Os03t0639300-01	Rice	nucleus	6.67	10.1
Os02t0564700-01	Rice	nucleus	11.18	9.92

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4349351	UniProt:A0A0P0XX67	ProteinID:BAT11999.1	ncoils:Coil
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0009506
GO:GO:0009567	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os10g0556200
EnsemblPlants:Os10t0556200-01	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF173	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00018F145B	RefSeq:XP_015612715.1	RefSeq:XP_015612716.1	RefSeq:XP_015612717.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

basic helix-loop-helix protein 113Hypothetical conserved gene. (Os10t0556200-01)

Coordinates

chr10:-:21863032..21867667

Molecular Weight (calculated)

48842.5 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.512

Length

465 amino acids

Sequence
(BLAST)

001: MNQCVPSWDL DDPVGGGGIG GGGGGGHRVV SGGGGGFMPV AVPTSDQYNE VAELTWEKGN ISSHGLLLNR PAPPKFPPHQ QLQAAMGGGG GGGVVGDRET
101: LEAVVGEAAA RSSSSSHLAA RARPVPAPWL GSVGVVAAAD ALVPCDADAA EGRSKRPREV VGEDGRRACA SQGSAAPGRR GESTLLTLDA CCGTAADDVC
201: GFTTTTNNST SLEDRTEDKG SPETENTSIA GGASDSRCFS RRSQSQRGGM CDEDEHVVIR GEGAMRSSIS TKRSRAAAIH NESERKRRDR INQKMKTLQK
301: LVPNSSKTDK ASMLDEVIDY LKQLQAQVQV MSRMGSMMMP MGMAMPQLQM SVMAQMAQMA QIGLSMMNMG QAGGYAPMHM HTPPFLPVSW DAAASSSSAA
401: AADRPPQPTG AATSDAFSAF LASQAAQQNA QQPNGMEAYN RMMAMYQKLN HQQQQQQDQP SNSRQ

Best Arabidopsis Sequence Match ( AT4G00050.1 )
(BLAST)

001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK

Arabidopsis Description

UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.