Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os08t0108500-01 | |
| Os09t0455300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36930.1 | Os09t0455300-01 | AT3G50330.1 | 17855426 |
| AT4G36930.1 | Os08t0108500-01 | AT5G09750.1 | 17855426 |
| AT4G36930.1 | Os09t0455300-01 | AT5G67060.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31309 | Sorghum | nucleus | 63.21 | 60.62 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 61.07 | 56.44 |
| CDY37185 | Canola | mitochondrion | 19.64 | 56.12 |
| TraesCS6D01G357700.1 | Wheat | nucleus | 58.57 | 55.22 |
| TraesCS6B01G411300.1 | Wheat | nucleus | 59.64 | 55.12 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 58.21 | 55.07 |
| Zm00001d018416_P001 | Maize | mitochondrion | 58.57 | 49.7 |
| KRH04711 | Soybean | plastid | 20.0 | 35.0 |
| Os06t0164400-01 | Rice | cytosol, mitochondrion, nucleus | 22.5 | 31.98 |
| KRH15381 | Soybean | nucleus | 32.14 | 30.3 |
| KRH05665 | Soybean | nucleus | 32.14 | 30.3 |
| KRH28453 | Soybean | nucleus | 31.43 | 30.24 |
| KRH04595 | Soybean | nucleus | 29.29 | 30.15 |
| AT5G67110.1 | Thale cress | nucleus | 22.14 | 29.52 |
| Os04t0618600-01 | Rice | nucleus | 18.93 | 29.28 |
| CDY24734 | Canola | plastid | 14.64 | 28.87 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 21.79 | 28.5 |
| CDY01438 | Canola | nucleus, plastid | 21.79 | 27.98 |
| CDY12804 | Canola | nucleus, plastid | 21.43 | 27.78 |
| PGSC0003DMT400020534 | Potato | nucleus | 28.93 | 25.8 |
| Solyc04g078690.2.1 | Tomato | nucleus | 28.93 | 25.8 |
| VIT_18s0001g10270.t01 | Wine grape | nucleus | 33.21 | 25.2 |
| KRH77016 | Soybean | nucleus | 32.86 | 24.53 |
| VIT_07s0031g00450.t01 | Wine grape | nucleus, plastid | 33.93 | 24.11 |
| CDX75629 | Canola | nucleus | 28.93 | 23.41 |
| CDY22448 | Canola | nucleus, plastid | 29.29 | 23.3 |
| CDY44048 | Canola | nucleus, plastid | 28.21 | 23.17 |
| Bra010591.1-P | Field mustard | nucleus, plastid | 28.21 | 23.17 |
| Bra011740.1-P | Field mustard | nucleus, plastid | 28.93 | 22.88 |
| PGSC0003DMT400010253 | Potato | nucleus | 30.71 | 22.87 |
| Os07t0182200-01 | Rice | cytosol | 11.07 | 22.79 |
| CDX69281 | Canola | nucleus, plastid | 28.21 | 22.64 |
| Solyc02g093280.2.1 | Tomato | nucleus | 30.36 | 22.49 |
| AT4G36930.1 | Thale cress | nucleus | 28.93 | 21.72 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 41.07 | 19.2 |
| Os03t0782500-01 | Rice | nucleus | 25.0 | 17.07 |
| Os07t0143200-01 | Rice | nucleus | 24.29 | 16.43 |
| Os12t0610200-01 | Rice | nucleus | 25.36 | 15.96 |
| Os03t0797600-01 | Rice | nucleus | 15.0 | 14.29 |
| Os05t0139100-01 | Rice | nucleus | 23.57 | 13.07 |
| Os10t0556200-01 | Rice | nucleus | 20.71 | 12.47 |
| Os06t0184000-00 | Rice | nucleus | 16.43 | 11.56 |
| Os02t0795800-00 | Rice | endoplasmic reticulum, mitochondrion, nucleus, plastid | 11.43 | 11.43 |
| Os01t0286100-01 | Rice | nucleus | 25.0 | 10.99 |
| Os06t0193400-01 | Rice | nucleus | 16.07 | 9.41 |
| Os02t0564700-01 | Rice | nucleus | 15.71 | 8.4 |
| Os03t0639300-01 | Rice | nucleus | 3.57 | 3.26 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A0P0VQW6 | ProteinID:BAS81458.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os02g0805250 |
| EnsemblPlants:Os02t0805250-00 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF306 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000393B32B | InterPro:bHLH_dom | SEG:seg | : | : |
Description
basic helix-loop-helix protein 107Hypothetical conserved gene. (Os02t0805250-00)
Coordinates
chr2:-:34354591..34356364
Molecular Weight (calculated)
31496.7 Da
IEP (calculated)
7.036
GRAVY (calculated)
-0.661
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDGRGSQEE EHLDLIMRHH ASMGLDRCES EEALGSSESE QPTRPARPRG KRSRAAEVHN LSEKRRRSRI NEKMKALQSL IPNSSKTDKA SMLDDAIEYL
101: KQLQLQVQML SMRNGLYLPP VNLSGAPEHL PIPQMSAALD QNSAKASDPS VVLQPVNQTS GALLPFELAS QHKPLFLPGV PNATALEPRF LVESSRSNLQ
201: SLRFTEPAEM IYPDEMMLKH RLTSASESTI VPGTDEKSVR QNTYMMNADR FDRYALSKDQ LQHIMPKNTE SVLDMPHLQR
101: KQLQLQVQML SMRNGLYLPP VNLSGAPEHL PIPQMSAALD QNSAKASDPS VVLQPVNQTS GALLPFELAS QHKPLFLPGV PNATALEPRF LVESSRSNLQ
201: SLRFTEPAEM IYPDEMMLKH RLTSASESTI VPGTDEKSVR QNTYMMNADR FDRYALSKDQ LQHIMPKNTE SVLDMPHLQR
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.