Factsheet for Bra012133.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12804	Canola	nucleus, plastid	97.66	96.76
CDY01438	Canola	nucleus, plastid	97.66	95.87
CDY24734	Canola	plastid	53.74	80.99
AT5G67110.1	Thale cress	nucleus	74.3	75.71
GSMUA_Achr9P11300_001	Banana	nucleus	20.09	68.25
TraesCS6A01G190600.1	Wheat	nucleus	25.23	41.86
KRH04711	Soybean	plastid	24.3	32.5
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	28.97	31.47
KRH05665	Soybean	nucleus	36.92	26.6
KRH15381	Soybean	nucleus	36.45	26.26
Bra011740.1-P	Field mustard	nucleus, plastid	41.12	24.86
Bra010591.1-P	Field mustard	nucleus, plastid	37.38	23.46
PGSC0003DMT400020534	Potato	nucleus	34.11	23.25
Solyc04g078690.2.1	Tomato	nucleus	34.11	23.25
OQU75890	Sorghum	nucleus	31.31	23.02
VIT_18s0001g10270.t01	Wine grape	nucleus	38.78	22.49
Zm00001d045212_P001	Maize	nucleus	34.58	21.83
Os02t0805250-00	Rice	nucleus	28.5	21.79
KXG31309	Sorghum	nucleus	29.44	21.58
TraesCS7A01G126900.1	Wheat	nucleus	33.18	21.45
TraesCS7D01G124700.1	Wheat	nucleus	33.18	21.01
TraesCS7B01G026300.1	Wheat	nucleus	33.18	20.94
HORVU7Hr1G026560.2	Barley	nucleus	32.71	20.71
GSMUA_Achr10P...	Banana	plastid	32.71	20.41
Bra037312.1-P	Field mustard	nucleus	19.16	19.62
HORVU6Hr1G088020.4	Barley	nucleus	27.1	19.59
GSMUA_Achr8P15670_001	Banana	nucleus	32.24	19.55
TraesCS6D01G357700.1	Wheat	nucleus	26.17	18.86
TraesCS6B01G411300.1	Wheat	nucleus	26.64	18.81
TraesCS6A01G373500.2	Wheat	nucleus	26.64	18.81
Zm00001d018416_P001	Maize	mitochondrion	28.5	18.48
Bra011237.1-P	Field mustard	plastid	17.76	17.59
Bra020398.1-P	Field mustard	nucleus	21.96	16.79
Bra002679.1-P	Field mustard	nucleus	21.96	16.26
Bra036256.1-P	Field mustard	nucleus	16.82	15.79
Bra006788.1-P	Field mustard	nucleus	21.5	15.33
Bra018539.1-P	Field mustard	nucleus	16.82	14.17
Bra003483.1-P	Field mustard	nucleus	19.63	13.68
Bra007863.1-P	Field mustard	nucleus	21.5	13.61
Bra000560.1-P	Field mustard	nucleus	24.3	13.4
Bra032111.1-P	Field mustard	nucleus	21.03	12.93
Bra037742.1-P	Field mustard	nucleus	23.83	12.56
Bra000283.1-P	Field mustard	nucleus	23.83	12.35
Bra020017.1-P	Field mustard	nucleus	28.5	12.35
Bra000872.1-P	Field mustard	nucleus	17.76	12.3
Bra033368.1-P	Field mustard	nucleus	17.76	12.22
Bra031668.1-P	Field mustard	nucleus	27.1	11.79
Bra007430.1-P	Field mustard	nucleus	22.9	11.5
Bra004489.1-P	Field mustard	nucleus	21.03	11.25
GSMUA_Achr7P20810_001	Banana	nucleus	30.84	11.02
Bra000436.1-P	Field mustard	nucleus	20.56	10.89
Bra011062.1-P	Field mustard	cytosol	21.03	9.83
Bra011061.1-P	Field mustard	nucleus	20.56	8.51
Bra007660.1-P	Field mustard	nucleus	14.95	7.58

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra012133	EnsemblPlants:Bra012133.1	EnsemblPlants:Bra012133.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0010047	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4D6M4	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF297
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025416FE	InterPro:bHLH_dom	SEG:seg	:

Description

AT5G67110 (E=3e-065) ALC | ALC (ALCATRAZ); DNA binding / transcription factor

Coordinates

chrA07:+:9841484..9842479

Molecular Weight (calculated)

23413.0 Da

IEP (calculated)

9.878

GRAVY (calculated)

-0.578

Length

214 amino acids

Sequence
(BLAST)

001: MGNSDEGDRL PAPSSSDELS SILRQVLSRA PTAQPSFSPK KIVSSAEMFN RTFPLVPGGA VSYAACAAAE TGEGKCGFEN KRNGARQRNS LKRNIDAQFH
101: NLSEKRRRSK INEKMKALQK LIPNSNKTDK ASMLDEAIEY LKQLQLQFQT LAAMNGLGLN PLRLPPILPP TQTRITGTSE QGLNLETLLG GSHSMANREP
201: PETQEMCFPT TTLL

Best Arabidopsis Sequence Match ( AT5G67110.1 )
(BLAST)

001: MGDSDVGDRL PPPSSSDELS SFLRQILSRT PTAQPSSPPK STNVSSAETF FPSVSGGAVS SVGYGVSETG QDKYAFEHKR SGAKQRNSLK RNIDAQFHNL
101: SEKKRRSKIN EKMKALQKLI PNSNKTDKAS MLDEAIEYLK QLQLQVQTLA VMNGLGLNPM RLPQVPPPTH TRINETLEQD LNLETLLAAP HSLEPAKTSQ
201: GMCFSTATLL

Arabidopsis Description

ALCTranscription factor ALC [Source:UniProtKB/Swiss-Prot;Acc:Q9FHA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.