Factsheet for Bra011061.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06870	Canola	nucleus	74.08	84.18
CDY06865	Canola	nucleus	49.52	71.31
AT4G28815.1	Thale cress	vacuole	31.72	53.42
AT4G28800.2	Thale cress	nucleus	46.42	52.52
Bra011062.1-P	Field mustard	cytosol	45.65	51.53
AT4G28811.1	Thale cress	nucleus	50.29	47.79
AT4G28790.1	Thale cress	nucleus	29.59	37.05
Bra037742.1-P	Field mustard	nucleus	17.8	22.66
Os04t0618600-01	Rice	nucleus	7.93	22.65
Bra000283.1-P	Field mustard	nucleus	17.21	21.55
Solyc04g007430.1.1	Tomato	nucleus	7.35	20.65
Bra012133.1-P	Field mustard	nucleus, plastid	8.51	20.56
TraesCS2D01G461900.1	Wheat	nucleus	6.19	20.38
EES11436	Sorghum	nucleus	7.35	20.21
Zm00001d002288_P002	Maize	nucleus	8.32	20.09
Bra007430.1-P	Field mustard	nucleus	16.44	19.95
PGSC0003DMT400015377	Potato	nucleus	7.54	19.21
HORVU2Hr1G104040.6	Barley	nucleus	6.77	18.62
Bra037312.1-P	Field mustard	nucleus	7.35	18.18
TraesCS2A01G461700.2	Wheat	nucleus	6.58	18.09
TraesCS2B01G483300.1	Wheat	nucleus	6.58	18.09
TraesCS2D01G461700.3	Wheat	nucleus	6.58	18.09
Bra000560.1-P	Field mustard	nucleus	13.35	17.78
Zm00001d026317_P003	Maize	nucleus, plastid	8.12	17.72
Bra031668.1-P	Field mustard	nucleus	16.25	17.07
Bra020017.1-P	Field mustard	nucleus	16.25	17.0
Bra011237.1-P	Field mustard	plastid	6.96	16.67
Bra003483.1-P	Field mustard	nucleus	9.86	16.61
Bra000436.1-P	Field mustard	nucleus	12.96	16.58
Bra004489.1-P	Field mustard	nucleus	12.77	16.5
Bra011740.1-P	Field mustard	nucleus, plastid	10.83	15.82
Bra010591.1-P	Field mustard	nucleus, plastid	10.25	15.54
Bra036256.1-P	Field mustard	nucleus	6.58	14.91
Bra020398.1-P	Field mustard	nucleus	7.93	14.64
Bra002679.1-P	Field mustard	nucleus	8.12	14.53
Bra006788.1-P	Field mustard	nucleus	7.93	13.67
Bra007863.1-P	Field mustard	nucleus	8.7	13.31
Bra000872.1-P	Field mustard	nucleus	7.93	13.27
Bra032111.1-P	Field mustard	nucleus	8.9	13.22
Bra033368.1-P	Field mustard	nucleus	7.93	13.18
Bra018539.1-P	Field mustard	nucleus	6.38	12.99
Bra007660.1-P	Field mustard	nucleus	10.06	12.32

Protein Annotations

EnsemblPlants:Bra011061.1	EnsemblPlants:Bra011061.1-P	EnsemblPlantsGene:Bra011061	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF145	PFAM:PF00010	PFscan:PS50888	SEG:seg
SUPFAM:SSF47459	UniParc:UPI00025458E4	UniProt:M4D3K7	MapMan:15.5.32	:	:

Description

AT4G28800 (E=1e-058) | transcription factor

Coordinates

chrA01:-:4159273..4162705

Molecular Weight (calculated)

57591.7 Da

IEP (calculated)

8.381

GRAVY (calculated)

-0.869

Length

517 amino acids

Sequence
(BLAST)

001: MKETKEKRQK GLRVEGRRHC ECRKRHSPHR DTHFRRERWR AYYLCKAQTS ESTFRQAKRE KETERNQGED DIVELLWKSG QVVESSQTQR PPVPPPILRG
101: SGSGGGGGEE SAPLPPPPPL HSHQQQPSDD QNLFIGEDEM ASWLLHHPLR EEDQFHSHLF YSGVVSAVSS TQPQASVSLT PPQPPAANTV YTPTATERPM
201: GQAIAARRAE SVFNFWRLRE NIHNTRGRVE AAAAPWVPVV KDSTQVGSSA TPSSSVATAT SGVLQAFAVP SLCQRGVETV CEVAGPSSSV VSKTETELLG
301: IETEAGDDER KRKEREEPAD DTEETGEEAR GSTSRKRSRA AEMHNISQRR RREKINEKMK ALQELIPRCN KMMSMGSGGM MPMMYTPNMQ RFMPSSAMGM
401: MGVNRPPFVP FPGMALPRPA HMEGLGPPYP PPRYPFPNVQ AFDPSRVHLP TPQPDSNQPQ FPGYVNPYSQ FVGLQHLQQP PPPPQLQNQS SSQLSFSQAS
501: SSKEPEDQDS GNVLRHF

Best Arabidopsis Sequence Match ( AT4G28811.1 )
(BLAST)

001: MGEDDIVELL WNGQVVRTSQ PQRPSSGKPS PTPPILRGSG SGSGEENAPL PLPLLQPPRP LHHQNLFIRE EEMSSWLHYS YTGVTSTPAT HPQSSVSLPP
101: PPPIAPSEDD VVELLWKSGQ VVQSIQTQRP IPPPIFRGSG SGGGEETVLP LPPLHPSHQN IFIQEDEMAS WLYHPLRQDY FSSGVASTSA TRPQSSASLA
201: PTPPPPSVPY GQIPVERRTE NFMNFLRLRG NIFSGGRVEA GPVVIESTQI GSSATPSSSA AESCVIPATH GTESRAAAIT GVSRTFAVPG LGRRGKEVAT
301: ETAGTSYSGV NKAETERVQI QPERETKITE DKKREETIAE IQGTEEAHGS TSRKRSRAAD MHNLSERRRR ERINERMKTL QELLPRCRKT DKVSMLEDVI
401: EYVKSLQLQI QMMSMGHGMM PPMMHEGNTQ QFMPHMAMGM KGMNRPPPFV PFPGKTFPRP GHMAGVGPSY PALRYPFPDT QASDLSRVHV PSLHSNPVPN
501: QPRFPAYINP YSQFVGLHQM QQPPLPLQGQ PTSQPSFSHA STSK

Arabidopsis Description

BHLH119Transcription factor bHLH119 [Source:UniProtKB/Swiss-Prot;Acc:Q8GT73]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.