CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0618600-01	Rice	nucleus	82.98	86.19
Zm00001d002288_P002	Maize	nucleus	92.55	81.31
TraesCS2A01G461700.2	Wheat	nucleus	80.32	80.32
TraesCS2B01G483300.1	Wheat	nucleus	80.32	80.32
HORVU2Hr1G104040.6	Barley	nucleus	80.32	80.32
TraesCS2D01G461700.3	Wheat	nucleus	79.79	79.79
TraesCS2D01G461900.1	Wheat	nucleus	65.96	78.98
CDY35224	Canola	nucleus	28.19	20.46
Solyc04g007430.1.1	Tomato	nucleus	18.62	19.02
KXG31309	Sorghum	nucleus	28.19	18.15
PGSC0003DMT400015377	Potato	nucleus	19.15	17.73
OQU75890	Sorghum	nucleus	27.13	17.53
OQU88567	Sorghum	nucleus	22.87	15.52
KXG37359	Sorghum	nucleus	22.34	14.79
OQU88421	Sorghum	nucleus	28.72	13.08
AT4G28815.1	Thale cress	vacuole	21.28	13.03
KXG23955	Sorghum	nucleus	31.91	12.63
AT4G28790.1	Thale cress	nucleus	26.6	12.11
CDY06865	Canola	nucleus	22.34	11.7
CDY35220	Canola	nucleus	22.87	11.59
CDY06870	Canola	nucleus	27.66	11.43
OQU91282	Sorghum	nucleus	32.45	11.3
EES05953	Sorghum	nucleus	23.4	11.2
CDY06867	Canola	nucleus	26.6	10.37
OQU89497	Sorghum	nucleus	25.53	10.32
EER89334	Sorghum	nucleus	24.47	10.29
AT4G28811.1	Thale cress	nucleus	29.26	10.11
AT4G28800.2	Thale cress	nucleus	24.47	10.07
KXG37432	Sorghum	plastid	25.53	9.96
KXG32305	Sorghum	nucleus	31.91	9.93
KXG21255	Sorghum	nucleus	31.91	8.72
OQU92150	Sorghum	nucleus	24.47	8.57
CDY35222	Canola	nucleus	25.0	8.15
Bra011061.1-P	Field mustard	nucleus	20.21	7.35
KXG19523	Sorghum	nucleus	19.15	7.32
KXG30460	Sorghum	nucleus	19.68	7.31
Bra011062.1-P	Field mustard	cytosol	17.55	7.21

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8074715	UniProt:C5YG39	EnsemblPlants:EES11436	ProteinID:EES11436
ProteinID:EES11436.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF145
SMART:SM00353	EnsemblPlantsGene:SORBI_3006G217800	SUPFAM:SSF47459	UniParc:UPI0001A86F6F	RefSeq:XP_002447108.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:56525941..56527905

Molecular Weight (calculated)

21550.6 Da

IEP (calculated)

9.969

GRAVY (calculated)

-0.945

Length

188 amino acids

Sequence
(BLAST)

001: MEDGSAPRRS TPPTTRRSRS AEFHNFSERR RRDRINEKLK ALQELLPNCT KTDKVSMLDE AIDYLKSLQL QLQMLVMGKG MAPVVPPELQ QYMHYITADP
101: AQMPPLRPSG QQPRQFQITQ ANPQQRQSNV ESDFLSQMQN LNPSEPPQNF LRPPKLQLYT SEQRGGLPST SQNTGWISGR SSSYNFME

Best Arabidopsis Sequence Match ( AT1G09530.1 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.