CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92129
EER99751
EES03178
EES04638
EES05136
EES10652
EES17536
EES18511
EES19816
KXG28874
KXG39270
OQU78307
OQU78451
OQU82238
OQU89591

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02590.1	EES17536	AT1G22630.1	21798944
AT4G02590.1	EES18511	AT1G78680.1	21798944
AT4G02590.1	EES19816	AT1G78680.1	21798944
AT4G02590.1	OQU78307	AT1G78680.1	21798944
AT4G02590.1	EES04638	AT2G24020.1	21798944
AT4G02590.1	EES03178	AT3G28715.1	21798944
AT4G02590.1	EER99751	AT3G47640.1	21798944
AT4G02590.1	KXG28874	AT3G47640.1	21798944
AT4G02590.1	KXG39270	AT3G47640.1	21798944
AT4G02590.1	OQU89591	AT4G25315.1	21798944
AT4G02590.1	EES05136	AT5G14070.1	21798944
AT4G02590.1	EES10652	AT5G14070.1	21798944
AT4G02590.1	EER92129	AT5G15802.1	21798944
AT4G02590.1	OQU78451	AT5G15802.1	21798944
AT4G02590.1	OQU82238	AT5G45620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018967_P001	Maize	nucleus	93.86	91.23
KXG37359	Sorghum	nucleus	81.59	79.58
GSMUA_Achr5P03100_001	Banana	nucleus	67.87	68.61
GSMUA_Achr4P21070_001	Banana	nucleus	71.48	66.0
KRH55381	Soybean	cytosol	16.25	65.22
Bra036256.1-P	Field mustard	nucleus	51.62	62.72
KRH32094	Soybean	nucleus	57.04	55.83
VIT_05s0020g04620.t01	Wine grape	nucleus	62.82	55.59
Bra018539.1-P	Field mustard	nucleus	50.54	55.12
VIT_07s0141g00220.t01	Wine grape	nucleus	57.4	55.02
KRG95612	Soybean	nucleus	57.4	54.45
PGSC0003DMT400015596	Potato	nucleus	58.12	53.14
KRH67287	Soybean	nucleus	55.96	53.08
PGSC0003DMT400049768	Potato	nucleus	57.76	52.98
Solyc09g083220.2.1	Tomato	nucleus	58.12	52.96
PGSC0003DMT400034840	Potato	nucleus	56.32	52.7
CDX91293	Canola	nucleus	56.68	52.68
Solyc09g065820.2.1	Tomato	nucleus	57.4	52.65
CDY21898	Canola	nucleus	56.32	51.83
Bra000872.1-P	Field mustard	nucleus	57.4	51.46
Solyc03g005350.2.1	Tomato	nucleus	54.87	51.35
CDY18011	Canola	nucleus	56.32	51.32
CDY22062	Canola	nucleus	56.32	51.32
VIT_14s0030g02230.t01	Wine grape	nucleus	61.01	51.06
AT4G02590.1	Thale cress	nucleus	56.68	50.65
CDX90930	Canola	nucleus	56.68	50.65
CDX97278	Canola	nucleus	53.79	49.83
KRH34087	Soybean	nucleus	58.12	49.09
KRG92679	Soybean	nucleus	58.12	48.49
CDY18143	Canola	nucleus	53.43	48.37
Bra033368.1-P	Field mustard	nucleus	53.43	47.59
CDX89919	Canola	nucleus	53.43	47.59
AT1G03040.3	Thale cress	nucleus	52.71	43.84
EES05953	Sorghum	nucleus	44.4	31.3
OQU89497	Sorghum	nucleus	48.74	29.03
EER89334	Sorghum	nucleus	45.13	27.96
EES11436	Sorghum	nucleus	15.52	22.87
KXG19523	Sorghum	nucleus	37.18	20.93
KXG30460	Sorghum	nucleus	36.82	20.16
OQU75890	Sorghum	nucleus	15.88	15.12
KXG31309	Sorghum	nucleus	14.8	14.04
OQU88421	Sorghum	nucleus	18.05	12.11
KXG23955	Sorghum	nucleus	18.41	10.74
KXG37432	Sorghum	plastid	16.61	9.54
OQU91282	Sorghum	nucleus	18.41	9.44
OQU92150	Sorghum	nucleus	18.05	9.31
KXG32305	Sorghum	nucleus	20.22	9.27
KXG21255	Sorghum	nucleus	19.13	7.7

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8056619	UniProt:A0A1W0W2G1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:OQU88567
ProteinID:OQU88567	ProteinID:OQU88567.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF103
SMART:SM00353	EnsemblPlantsGene:SORBI_3002G054600	SUPFAM:SSF47459	UniParc:UPI00018DFD4E	RefSeq:XP_002461549.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:5229043..5232241

Molecular Weight (calculated)

29444.2 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.394

Length

277 amino acids

Sequence
(BLAST)

001: MAGQPPPPGG SEDDFLEHFF AFPSAASAAA GGHAGAGAGG DHPFPLALSL DAAAEPKPDR DPVQLAGLFP PVFAGAGGVQ QPHLRGPPPP QMFQAQPKPG
101: EGGMAPQPPA PRPKVRARRG QATDPHSIAE RLRRERIAER MRALQELVPN TNKTDRAAML DEILDYVKFL RLQVKVLSMS RLGGAGAVAQ LVADIPLSVK
201: GEASDSGSTQ HIWEKWSTDG TEKQVAKLME EDIGAAMQFL QSKALCMMPI SLAMAIYDTQ HSQDGHSLMK PEPNTSS

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.