Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g083220.2.1 | Tomato | nucleus | 96.7 | 96.38 |
| PGSC0003DMT400034840 | Potato | nucleus | 76.57 | 78.38 |
| Os07t0182200-01 | Rice | cytosol | 33.0 | 73.53 |
| VIT_05s0020g04620.t01 | Wine grape | nucleus | 63.04 | 61.02 |
| OQU88567 | Sorghum | nucleus | 53.14 | 58.12 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 51.49 | 56.93 |
| Zm00001d018967_P001 | Maize | nucleus | 51.82 | 55.09 |
| PGSC0003DMT400049768 | Potato | nucleus | 54.79 | 54.97 |
| Zm00001d013073_P002 | Maize | nucleus | 51.49 | 54.74 |
| KXG37359 | Sorghum | nucleus | 51.16 | 54.58 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 53.8 | 54.33 |
| TraesCS5D01G449200.1 | Wheat | nucleus | 49.84 | 53.74 |
| TraesCS5B01G445900.1 | Wheat | nucleus | 49.84 | 53.74 |
| Os03t0797600-01 | Rice | nucleus | 51.49 | 53.06 |
| TraesCS5A01G441900.1 | Wheat | nucleus | 48.18 | 51.96 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 56.11 | 48.16 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 49.51 | 48.08 |
| PGSC0003DMT400020244 | Potato | nucleus | 43.23 | 34.29 |
| PGSC0003DMT400028917 | Potato | nucleus | 44.55 | 30.41 |
| PGSC0003DMT400015377 | Potato | nucleus | 12.87 | 19.21 |
| PGSC0003DMT400010253 | Potato | nucleus | 15.51 | 12.5 |
| PGSC0003DMT400020534 | Potato | nucleus | 12.87 | 12.42 |
| PGSC0003DMT400063117 | Potato | nucleus | 16.5 | 11.44 |
| PGSC0003DMT400038134 | Potato | nucleus | 19.14 | 11.26 |
| PGSC0003DMT400041156 | Potato | nucleus | 18.48 | 10.83 |
| PGSC0003DMT400066807 | Potato | nucleus | 15.84 | 10.34 |
| PGSC0003DMT400048756 | Potato | nucleus | 19.47 | 10.21 |
| PGSC0003DMT400083164 | Potato | nucleus | 13.2 | 9.62 |
| PGSC0003DMT400047079 | Potato | nucleus | 18.81 | 8.05 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:ABB16991 | ProteinID:ABB16991.1 | ProteinID:AFW90609 | ProteinID:AFW90609.1 |
| EMBL:DQ228342 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | EMBL:JX576253 | UniProt:M1A695 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400006089 |
| PGSC:PGSC0003DMG400006089 | EnsemblPlants:PGSC0003DMT400015596 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF15 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000295D695 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
Basic helix-loop-helix protein BHLH3 [Source:PGSC_GENE;Acc:PGSC0003DMG400006089]
Coordinates
chr9:+:55235681..55239863
Molecular Weight (calculated)
32865.9 Da
IEP (calculated)
5.349
GRAVY (calculated)
-0.295
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANQPEAYA DDFLEQILAI PSYGLPVADV GTPSETTSFT SASAVSHLNS AAAAGLQQPM FPLGLSLDNG RDDVSEAGAY AVKHERDGMN IGNLYVGLEH
101: LQSHAVRHSL PSVHHVQPFQ GPPTTSTTVT VPQPPSIRPR VRARRGQATD PHSIAERLRR ERISERIKAL QELVPSCNKT DRAAMLDEIL DYVKFLRLQV
201: KVLSMSRLGG ASAVAQLVAD IPLQSVEGDS GESRSNQHIW DKWSNVDTEQ EVAKLMEEDV GAAMQYLQSK SLCIMPISLA ALIYPTQQPD DQSLVKPEAA
301: APS
101: LQSHAVRHSL PSVHHVQPFQ GPPTTSTTVT VPQPPSIRPR VRARRGQATD PHSIAERLRR ERISERIKAL QELVPSCNKT DRAAMLDEIL DYVKFLRLQV
201: KVLSMSRLGG ASAVAQLVAD IPLQSVEGDS GESRSNQHIW DKWSNVDTEQ EVAKLMEEDV GAAMQYLQSK SLCIMPISLA ALIYPTQQPD DQSLVKPEAA
301: APS
001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ
Arabidopsis Description
UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.