Factsheet for PGSC0003DMT400041156

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g043580.2.1	Tomato	nucleus	93.23	97.37
VIT_12s0028g01110.t01	Wine grape	nucleus	57.45	53.23
KRH45975	Soybean	nucleus	46.81	46.1
KRG99030	Soybean	nucleus	46.81	44.24
KRH73584	Soybean	nucleus	46.03	42.35
KRH14535	Soybean	nucleus	45.84	42.17
CDY67566	Canola	nucleus, plastid	22.24	41.97
CDY00603	Canola	nucleus, plastid	22.24	41.97
CDY30375	Canola	nucleus	31.33	39.9
Bra037742.1-P	Field mustard	nucleus	31.33	39.9
CDY29961	Canola	nucleus	30.95	39.31
CDX70453	Canola	nucleus	30.95	39.31
CDX83509	Canola	nucleus	31.33	39.23
Bra000283.1-P	Field mustard	nucleus	31.33	39.23
CDY42809	Canola	nucleus	31.33	39.13
CDY14866	Canola	nucleus	29.98	38.46
AT3G59060.2	Thale cress	nucleus	31.53	36.71
Bra007430.1-P	Field mustard	nucleus	29.98	36.38
CDX71916	Canola	nucleus	30.95	36.12
HORVU5Hr1G102240.3	Barley	nucleus	27.66	36.11
CDY06026	Canola	nucleus	30.75	35.97
TraesCS5B01G422000.1	Wheat	nucleus	28.43	35.85
Os03t0782500-01	Rice	nucleus	27.85	35.12
TraesCS5D01G428400.2	Wheat	nucleus	28.05	34.69
Zm00001d034298_P001	Maize	nucleus	28.05	34.36
AT2G43010.5	Thale cress	extracellular, vacuole	31.33	34.32
TraesCS2B01G273500.1	Wheat	nucleus	23.02	33.24
TraesCS2A01G253900.2	Wheat	nucleus	23.02	33.24
TraesCS5A01G420200.1	Wheat	nucleus	26.69	32.86
OQU88421	Sorghum	nucleus	25.73	32.2
HORVU2Hr1G060680.1	Barley	nucleus	22.44	32.04
Zm00001d013130_P001	Maize	nucleus	23.98	32.04
Os07t0143200-01	Rice	nucleus	23.98	29.95
TraesCS2D01G254400.3	Wheat	nucleus	23.4	28.14
PGSC0003DMT400038134	Potato	nucleus	25.15	25.24
PGSC0003DMT400048756	Potato	nucleus	28.05	25.09
PGSC0003DMT400020534	Potato	nucleus	12.96	21.34
PGSC0003DMT400063117	Potato	nucleus	17.99	21.28
PGSC0003DMT400015377	Potato	nucleus	7.93	20.2
PGSC0003DMT400083164	Potato	nucleus	16.05	19.95
KXG37432	Sorghum	plastid	18.18	19.5
PGSC0003DMT400047079	Potato	nucleus	26.69	19.49
PGSC0003DMT400010253	Potato	nucleus	14.12	19.41
PGSC0003DMT400034840	Potato	nucleus	11.03	19.26
PGSC0003DMT400066807	Potato	nucleus	16.83	18.75
PGSC0003DMT400015596	Potato	nucleus	10.83	18.48
PGSC0003DMT400020244	Potato	nucleus	12.57	17.02
PGSC0003DMT400049768	Potato	nucleus	9.48	16.23
PGSC0003DMT400028917	Potato	nucleus	13.93	16.22

Protein Annotations

EntrezGene:102604886	MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M1BAZ9	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG401015926	PGSC:PGSC0003DMG401015926	EnsemblPlants:PGSC0003DMT400041156	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF145	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002961456	RefSeq:XP_006357888.1
RefSeq:XP_015169146.1	RefSeq:XP_015169147.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

Isoform 2 of Transcription factor PIF5 [Source:PGSC_GENE;Acc:PGSC0003DMG401015926]

Coordinates

chr7:+:42074703..42078252

Molecular Weight (calculated)

57440.5 Da

IEP (calculated)

7.530

GRAVY (calculated)

-0.810

Length

517 amino acids

Sequence
(BLAST)

001: MNPCLPEWNI ETELPVPHQK KPMGFDHELV ELLWRNGEVV LHNQTHKKQP GYDPNECRQF NKYDQPTIRV AGNQTNLIQD DETVSWLNCP IYDSFDKEFC
101: SPFLSDISTN PHLGEEPDKS IRQSEDNNKV FKLDPLEINH VLPQSHHSGF NPNPMPPPRF HNFGSAQQKH HIVGGNQKGV NFPPPIRSSN VQLGGKEARS
201: NLMLQDIKEG SVMTVGSSHC GSNQVDTSRF SSSANRGLSA AMITDYTGKI SPQSDTMDRD TFEPANTSSS SGRSGSSYAR ACNQSTATNS QGHKRKSRDG
301: EEPECQSKAD ELESAGGNKA AQKSGTARRS RAAEVHNLSE RRRRDRINEK MKALQELLPH STKTDKASML DEAIEYLKSL QMQLQMMWMG SGMASMMFPG
401: VQHYMSRMGM GMGPPSVPSM HNAMHLARLP LVDPAIPLTQ AAPNNQAAAM CQNSMLNQVN YQRHLQNPNF PEQYASYMGF HPLQGTSQPI NIFGLGSHTA
501: QRSQQLPHPT NSNAPAT

Best Arabidopsis Sequence Match ( AT2G43010.2 )
(BLAST)

001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH

Arabidopsis Description

PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.