Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14535 | Soybean | nucleus | 88.79 | 88.79 |
| KRH45975 | Soybean | nucleus | 66.01 | 70.67 |
| KRG99030 | Soybean | nucleus | 67.44 | 69.29 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 48.22 | 48.57 |
| Solyc07g043580.2.1 | Tomato | nucleus | 40.57 | 46.06 |
| PGSC0003DMT400041156 | Potato | nucleus | 42.35 | 46.03 |
| KRH71636 | Soybean | golgi, plasma membrane, vacuole | 12.28 | 45.1 |
| CDY00603 | Canola | nucleus, plastid | 21.17 | 43.43 |
| CDY67566 | Canola | nucleus, plastid | 21.17 | 43.43 |
| Bra000283.1-P | Field mustard | nucleus | 31.49 | 42.86 |
| CDX83509 | Canola | nucleus | 31.14 | 42.37 |
| CDY42809 | Canola | nucleus | 30.43 | 41.3 |
| Bra037742.1-P | Field mustard | nucleus | 29.0 | 40.15 |
| CDY30375 | Canola | nucleus | 29.0 | 40.15 |
| CDY29961 | Canola | nucleus | 29.0 | 40.05 |
| CDX70453 | Canola | nucleus | 29.0 | 40.05 |
| CDY14866 | Canola | nucleus | 27.94 | 38.96 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 31.85 | 37.92 |
| Bra007430.1-P | Field mustard | nucleus | 28.47 | 37.56 |
| CDY06026 | Canola | nucleus | 29.36 | 37.33 |
| CDX71916 | Canola | nucleus | 29.36 | 37.25 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 25.98 | 36.87 |
| AT3G59060.2 | Thale cress | nucleus | 28.83 | 36.49 |
| Os03t0782500-01 | Rice | nucleus | 26.51 | 36.34 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 26.33 | 35.41 |
| TraesCS5B01G422000.1 | Wheat | nucleus | 25.8 | 35.37 |
| KRH04711 | Soybean | plastid | 9.96 | 35.0 |
| TraesCS2B01G273500.1 | Wheat | nucleus | 22.24 | 34.92 |
| TraesCS2A01G253900.2 | Wheat | nucleus | 21.71 | 34.08 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 21.71 | 33.7 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 24.91 | 33.33 |
| Zm00001d034298_P001 | Maize | nucleus | 24.73 | 32.94 |
| KRH76132 | Soybean | nucleus | 10.68 | 32.79 |
| Os07t0143200-01 | Rice | nucleus | 23.67 | 32.13 |
| Zm00001d013130_P001 | Maize | nucleus | 22.06 | 32.04 |
| OQU88421 | Sorghum | nucleus | 23.13 | 31.48 |
| KRH72281 | Soybean | nucleus, plastid | 6.94 | 31.2 |
| KRH32290 | Soybean | nucleus | 26.33 | 30.14 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 22.78 | 29.77 |
| KRH19683 | Soybean | nucleus | 26.33 | 29.08 |
| KRH67519 | Soybean | nucleus | 25.44 | 28.49 |
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 8.72 | 27.22 |
| KRH28453 | Soybean | nucleus | 13.52 | 26.12 |
| KRH04595 | Soybean | nucleus | 12.63 | 26.1 |
| KRH55381 | Soybean | cytosol | 3.2 | 26.09 |
| KRH05665 | Soybean | nucleus | 12.46 | 23.57 |
| KRH15381 | Soybean | nucleus | 12.46 | 23.57 |
| KRH77016 | Soybean | nucleus | 15.66 | 23.47 |
| KRH33663 | Soybean | nucleus | 17.44 | 21.83 |
| KRH71345 | Soybean | nucleus | 6.76 | 21.47 |
| KRH54630 | Soybean | nucleus | 15.3 | 21.39 |
| KRG88937 | Soybean | nucleus | 17.62 | 21.29 |
| KRH75301 | Soybean | nucleus | 17.08 | 20.96 |
| KRH68348 | Soybean | nucleus | 18.86 | 20.5 |
| KRH65412 | Soybean | nucleus | 14.41 | 20.4 |
| KXG37432 | Sorghum | plastid | 17.44 | 20.33 |
| KRG96663 | Soybean | nucleus | 21.53 | 19.12 |
| KRG96615 | Soybean | nucleus | 17.62 | 19.11 |
| KRH68390 | Soybean | nucleus | 20.46 | 18.43 |
| KRH32094 | Soybean | nucleus | 9.25 | 18.37 |
| KRH03075 | Soybean | nucleus | 11.57 | 17.71 |
| KRG95612 | Soybean | nucleus | 9.07 | 17.47 |
| KRG90443 | Soybean | nucleus | 22.24 | 17.31 |
| KRH33733 | Soybean | nucleus | 21.17 | 17.22 |
| KRH67287 | Soybean | nucleus | 8.9 | 17.12 |
| KRG92679 | Soybean | nucleus | 9.25 | 15.66 |
| KRH34087 | Soybean | nucleus | 8.9 | 15.24 |
| KRH12909 | Soybean | nucleus | 12.81 | 15.16 |
| KRH37912 | Soybean | nucleus | 12.99 | 14.9 |
| KRH05051 | Soybean | nucleus | 10.14 | 14.25 |
| KRH71344 | Soybean | cytosol | 1.07 | 8.0 |
Protein Annotations
| EntrezGene:100811777 | MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | EMBL:ACUP02001284 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_02G282100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| UniProt:I1JJ02 | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:KRH73584 | ProteinID:KRH73584 | ProteinID:KRH73584.1 |
| ProteinID:KRH73585.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF284 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000211CE3D | InterPro:bHLH_dom | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:-:46437888..46443042
Molecular Weight (calculated)
62232.0 Da
IEP (calculated)
7.050
GRAVY (calculated)
-0.782
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNSIPGWDF ESDTCLTNQR KLIGPDQELV ELLWKNGQVV MHNQTHRKTL GNSSNLRQVQ KSDQSVLRSS GPYGNSSNLD QEDAAPWVQF PLEDPLEQDF
101: CSNLLSELPT CEFESYKPIR QLEEEKFAKF FASGTPHHPT TSSSQPLPPN MKPSCIQGLQ GNPIPMPAPR FHGPDSSQKI HDFGASRKVL NFPQFSTPRN
201: NVPSAPGITQ FREKTTANMS QSEAREYSVI TVGSSHCGSN HIPQEQDVSR ISSTGVWATT NNNTTLSAEP EAVRDYVQRP ICPKSGQGKS EMIELTVTSS
301: SGGSGSTGIG RTCSLSTRDH GQKRKGTEEE ALEEQSEDTE LKSADGNKAS QRTRSSRRNR AAEVHNQSER RRRDRINEKM RTLQQLIPNS NKTDKASMLE
401: EAIEYLKSLQ FQLQVMWMGG GMTPVMFPGI QHYMSQMGMG MGAPSLPSIH NPMQLPKVPH DQAMSVLQIP NQNLMCQNPV LGAFNYQNQM QNPCLPEQYA
501: RYMGYHLMQN ASQPMNVFRY GSQAVQHSQT MIAPGNNSSG PMSGTANIDD ADSGKAGSST FN
101: CSNLLSELPT CEFESYKPIR QLEEEKFAKF FASGTPHHPT TSSSQPLPPN MKPSCIQGLQ GNPIPMPAPR FHGPDSSQKI HDFGASRKVL NFPQFSTPRN
201: NVPSAPGITQ FREKTTANMS QSEAREYSVI TVGSSHCGSN HIPQEQDVSR ISSTGVWATT NNNTTLSAEP EAVRDYVQRP ICPKSGQGKS EMIELTVTSS
301: SGGSGSTGIG RTCSLSTRDH GQKRKGTEEE ALEEQSEDTE LKSADGNKAS QRTRSSRRNR AAEVHNQSER RRRDRINEKM RTLQQLIPNS NKTDKASMLE
401: EAIEYLKSLQ FQLQVMWMGG GMTPVMFPGI QHYMSQMGMG MGAPSLPSIH NPMQLPKVPH DQAMSVLQIP NQNLMCQNPV LGAFNYQNQM QNPCLPEQYA
501: RYMGYHLMQN ASQPMNVFRY GSQAVQHSQT MIAPGNNSSG PMSGTANIDD ADSGKAGSST FN
001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
Arabidopsis Description
PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.