Factsheet for TraesCS5D01G428400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G422000.1	Wheat	nucleus	94.98	96.83
HORVU5Hr1G102240.3	Barley	nucleus	89.23	94.19
TraesCS5A01G420200.1	Wheat	nucleus	89.95	89.52
Os03t0782500-01	Rice	nucleus	69.62	70.98
Zm00001d013130_P001	Maize	nucleus	58.13	62.79
Zm00001d034298_P001	Maize	nucleus	62.68	62.09
TraesCS2D01G254400.3	Wheat	nucleus	43.54	42.33
CDY00603	Canola	nucleus, plastid	24.4	37.23
CDY67566	Canola	nucleus, plastid	24.4	37.23
KXG37432	Sorghum	plastid	41.15	35.68
CDY29961	Canola	nucleus	30.38	31.2
CDX70453	Canola	nucleus	30.38	31.2
CDY30375	Canola	nucleus	30.14	31.03
Bra037742.1-P	Field mustard	nucleus	30.14	31.03
CDY14866	Canola	nucleus	29.9	31.02
CDY42809	Canola	nucleus	30.38	30.68
TraesCS2D01G461900.1	Wheat	nucleus	11.48	30.57
CDX83509	Canola	nucleus	30.14	30.51
Bra000283.1-P	Field mustard	nucleus	30.14	30.51
Bra007430.1-P	Field mustard	nucleus	30.14	29.58
AT3G59060.2	Thale cress	nucleus	31.1	29.28
CDX71916	Canola	nucleus	30.62	28.89
Solyc07g043580.2.1	Tomato	nucleus	34.21	28.89
CDY06026	Canola	nucleus	30.38	28.73
KRH45975	Soybean	nucleus	35.89	28.57
TraesCS2D01G461700.3	Wheat	nucleus	12.68	28.19
PGSC0003DMT400041156	Potato	nucleus	34.69	28.05
KRG99030	Soybean	nucleus	36.6	27.97
AT2G43010.5	Thale cress	extracellular, vacuole	31.58	27.97
VIT_12s0028g01110.t01	Wine grape	nucleus	36.84	27.6
TraesCS5D01G060300.1	Wheat	nucleus	22.25	26.57
KRH73584	Soybean	nucleus	35.41	26.33
KRH14535	Soybean	nucleus	34.69	25.8
TraesCS5D01G386500.1	Wheat	nucleus	27.51	22.29
TraesCS7D01G124700.1	Wheat	nucleus	16.03	19.82
TraesCS1D01G084200.1	Wheat	nucleus	23.68	19.72
TraesCS6D01G357700.1	Wheat	nucleus	13.88	19.53
TraesCS1D01G215600.2	Wheat	nucleus	18.66	17.14
TraesCS7D01G149400.1	Wheat	nucleus	16.03	16.75
TraesCS5D01G449200.1	Wheat	nucleus	11.0	16.37
TraesCS6D01G341200.1	Wheat	nucleus	12.68	14.8
TraesCS5D01G233000.1	Wheat	nucleus	14.35	12.82
TraesCS7D01G158300.1	Wheat	nucleus	12.44	10.83

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0045893	GO:GO:0046983	GO:GO:0080006
GO:GO:0090229	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF194	SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:TraesCS5D01G428400	EnsemblPlants:TraesCS5D01G428400.2
InterPro:bHLH_dom	TIGR:cd00083	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:+:486167192..486169120

Molecular Weight (calculated)

44087.8 Da

IEP (calculated)

6.749

GRAVY (calculated)

-0.589

Length

418 amino acids

Sequence
(BLAST)

001: MDGNGRSAAS HKKPLVADND LVELLWHNGA VVAQPQTHPR PAPSGLAGGG GETAAWFQDD VDALGNDVYA QLWNSIAVGA APEVACAALP GPSSHPPPPQ
101: LPPPPMRSGI ASSWTGGDIG STFCGSNLVP EVPAGDREEA SAAPPSEGTR GASTRDGGAG TSSSGGSGSN FGGSGLPSES GGHAHKRKGR GKDDSDSRSE
201: RKLQDVECEA TEETKSSRRH GSKRRSRAAE VHNQSERRRR DRINEKMRSL QELIPHCNKA DKASILDEAI EYLKSLQMQV QIMWMTTGMA PMMFPGSHQF
301: MPPMAVGMNS ACMPAAQGLN QMARVPYMNH SLSNHIPMNP SPAMNPMYIA NQMQNIQLRE AASNHFLHLD GGQATAPQVA GPYAYTPQVA PKSQIPEVPD
401: CTVAPISGPG QPPAPDGI

Best Arabidopsis Sequence Match ( AT3G59060.3 )
(BLAST)

001: MEQVFADWNF EDNFHMSTNK RSIRPEDELV ELLWRDGQVV LQSQARREPS VQVQTHKQET LRKPNNIFLD NQETVQKPNY AALDDQETVS WIQYPPDDVI
101: DPFESEFSSH FFSSIDHLGG PEKPRTIEET VKHEAQAMAP PKFRSSVITV GPSHCGSNQS TNIHQATTLP VSMSDRSKNV EERLDTSSGG SSGCSYGRNN
201: KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID
301: YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ LSQFPVMNRS APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP
401: PAGNQMQTVQ QQPADMLGFG SPAGPQSQLS APATTDSLHM GKIG

Arabidopsis Description

PIF5Transcription factor PIF5 [Source:UniProtKB/Swiss-Prot;Acc:Q84LH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.