Factsheet for TraesCS5D01G233000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G225700.1	Wheat	nucleus	94.87	96.94
TraesCS5B01G224200.1	Wheat	nucleus	95.94	96.56
Zm00001d020490_P001	Maize	nucleus	50.85	69.19
KRH72281	Soybean	nucleus, plastid	15.81	59.2
CDY20290	Canola	endoplasmic reticulum, extracellular	23.08	53.2
CDY46132	Canola	endoplasmic reticulum	19.66	52.27
TraesCS6D01G341200.1	Wheat	nucleus	39.74	51.96
TraesCS7D01G149400.1	Wheat	nucleus	44.23	51.75
GSMUA_Achr5P16470_001	Banana	nucleus	47.44	48.79
TraesCS5D01G449200.1	Wheat	nucleus	29.27	48.75
CDY46133	Canola	nucleus	16.03	39.27
TraesCS2D01G461900.1	Wheat	nucleus	9.62	28.66
TraesCS7D01G158300.1	Wheat	nucleus	27.35	26.67
TraesCS2D01G461700.3	Wheat	nucleus	10.26	25.53
TraesCS6D01G357700.1	Wheat	nucleus	11.32	17.85
TraesCS7D01G124700.1	Wheat	nucleus	11.97	16.57
TraesCS5D01G060300.1	Wheat	nucleus	11.75	15.71
TraesCS5D01G428400.2	Wheat	nucleus	12.82	14.35
TraesCS1D01G084200.1	Wheat	nucleus	14.32	13.35
TraesCS2D01G254400.3	Wheat	nucleus	12.18	13.26
TraesCS5D01G386500.1	Wheat	nucleus	13.89	12.6
TraesCS1D01G215600.2	Wheat	nucleus	12.18	12.53

Protein Annotations

EnsemblPlants:TraesCS5D01G233000.1	EnsemblPlantsGene:TraesCS5D01G233000	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:340509721..340512712

Molecular Weight (calculated)

47151.8 Da

IEP (calculated)

6.650

GRAVY (calculated)

-0.298

Length

468 amino acids

Sequence
(BLAST)

001: MQPTAREMQA MAAAGQISLD DLRSGHAGAG NGAGGGVHDD FLDQMFGSLP PSAWHDLAAG TKPEDGGQGE GMQQQQQLFG GPYDDSVMLA SRLRQHQISG
101: GPGGAAASAK QMVLQQLADL RQGHHNNMLL QGMGRSPSIG GGGGEGGLLL PLTLGNGGSG GDVQALLKAA ANSAGGDAGV FGGFAGSLQQ QQHFQPHPQQ
201: QTAPMPSQTF GGVGGAPGGG AQPQQQAGGG GVGGAPAPPR QRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN KWLQTDKASM LDEIIDYVKF
301: LQLQVKTSTP THAQVLSMSR LGGAAAVAPL VADMSSEGRG GAAAGAADGS DGLTVTEQQV AKLMEEDMGA AMQYLQGKGL CLMPVSLASA ISSATCQLRP
401: PAAAAGGPFT AAQHMSAAMR MGVGDGGVPA SPSMSVLTAQ SAMANGGGAC ANDGEGSHPK DAASVSKP

Best Arabidopsis Sequence Match ( AT2G24260.2 )
(BLAST)

001: MNQQGQTQTQ TQPQASASTA TGGTVAAPPQ SRTKIRARRG QATDPHSIAE RLRRERIAER MKALQELVPN GNKTDKASML DEIIDYVKFL QLQVKVLSMS
101: RLGGAASVSS QISEAGGSHG NASSAMVGGS QTAGNSNDSV TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPLI PGAVADVGGP
201: SPPNLSGMTI QSTSTKMGSG NGKLNGNGVT ERSSSIAVKE AVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.