Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034298_P001 | Maize | nucleus | 85.27 | 78.2 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 61.76 | 60.35 |
| Os03t0782500-01 | Rice | nucleus | 63.31 | 59.76 |
| TraesCS5B01G422000.1 | Wheat | nucleus | 62.27 | 58.78 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 62.79 | 58.13 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 57.88 | 53.33 |
| KXG37432 | Sorghum | plastid | 49.35 | 39.63 |
| CDY00603 | Canola | nucleus, plastid | 20.16 | 28.47 |
| CDY67566 | Canola | nucleus, plastid | 20.16 | 28.47 |
| CDX83509 | Canola | nucleus | 27.91 | 26.15 |
| Bra007430.1-P | Field mustard | nucleus | 28.68 | 26.06 |
| Bra000283.1-P | Field mustard | nucleus | 27.65 | 25.91 |
| CDY42809 | Canola | nucleus | 27.65 | 25.85 |
| CDY06026 | Canola | nucleus | 29.2 | 25.57 |
| CDY29961 | Canola | nucleus | 26.87 | 25.55 |
| CDX70453 | Canola | nucleus | 26.87 | 25.55 |
| CDY14866 | Canola | nucleus | 26.36 | 25.31 |
| CDX71916 | Canola | nucleus | 28.94 | 25.28 |
| CDY30375 | Canola | nucleus | 26.36 | 25.12 |
| Bra037742.1-P | Field mustard | nucleus | 26.36 | 25.12 |
| AT3G59060.2 | Thale cress | nucleus | 28.42 | 24.77 |
| Solyc07g043580.2.1 | Tomato | nucleus | 31.52 | 24.65 |
| PGSC0003DMT400041156 | Potato | nucleus | 32.04 | 23.98 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 28.68 | 23.52 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 32.82 | 22.76 |
| Zm00001d002288_P002 | Maize | nucleus | 12.4 | 22.43 |
| KRH45975 | Soybean | nucleus | 29.97 | 22.1 |
| KRH73584 | Soybean | nucleus | 32.04 | 22.06 |
| KRG99030 | Soybean | nucleus | 31.01 | 21.94 |
| Zm00001d031044_P001 | Maize | nucleus | 22.48 | 21.8 |
| Zm00001d026317_P003 | Maize | nucleus, plastid | 13.18 | 21.52 |
| KRH14535 | Soybean | nucleus | 31.01 | 21.35 |
| Zm00001d033267_P001 | Maize | nucleus | 25.58 | 18.07 |
| Zm00001d018967_P001 | Maize | nucleus | 11.63 | 15.79 |
| Zm00001d013073_P002 | Maize | nucleus | 11.63 | 15.79 |
| Zm00001d020490_P001 | Maize | nucleus | 13.95 | 15.7 |
| Zm00001d024783_P001 | Maize | nucleus | 20.41 | 15.64 |
| Zm00001d045212_P001 | Maize | nucleus | 13.7 | 15.63 |
| Zm00001d040536_P005 | Maize | nucleus | 22.74 | 15.52 |
| Zm00001d018416_P001 | Maize | mitochondrion | 13.18 | 15.45 |
| Zm00001d052038_P001 | Maize | nucleus | 12.92 | 14.97 |
| Zm00001d018374_P001 | Maize | nucleus | 14.21 | 14.14 |
| Zm00001d045107_P001 | Maize | nucleus | 11.89 | 13.86 |
| Zm00001d008205_P001 | Maize | nucleus | 22.48 | 13.64 |
| Zm00001d005750_P002 | Maize | mitochondrion | 13.44 | 12.71 |
| Zm00001d000291_P001 | Maize | nucleus | 14.99 | 12.37 |
| Zm00001d029898_P001 | Maize | nucleus | 13.7 | 10.82 |
| Zm00001d016873_P001 | Maize | nucleus | 12.4 | 9.82 |
| Zm00001d045046_P001 | Maize | nucleus | 11.11 | 8.94 |
| Zm00001d037098_P003 | Maize | nucleus | 11.11 | 8.25 |
| Zm00001d029897_P001 | Maize | nucleus | 3.62 | 5.13 |
Protein Annotations
| EnsemblPlants:Zm00001d013130_P001 | EnsemblPlants:Zm00001d013130_T001 | EnsemblPlantsGene:Zm00001d013130 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:AQK62548.1 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000221D6EB | UniProt:A0A1D6GG70 | MapMan:15.5.32 | : |
Description
bHLH-transcription factor 60Transcription factor PIF4
Coordinates
chr5:-:5228815..5231062
Molecular Weight (calculated)
41721.1 Da
IEP (calculated)
6.554
GRAVY (calculated)
-0.585
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGNARSTAA SQKKSIVPDD DLVELLWHNG SVVAQPQGHH RPAPPSDRDC PGTSGLTAEE TAAWFPDTLD DSLEKDLYTQ LWYSTIADAA PQHEGMFPGP
101: TSQPSPPPPV ASSGVESSWA GDICSTFCGS NQVPRTPAGI RGKDAALQPE VPSGAGAHDG TSSSGGSGSN YGGSGLPSDS VHVHKRKGMC RDESDSRSER
201: RRDRIKEKMR ALQELIPHCN KTDKASILDE TIEYLKSLQM QVQIMWMTSG MVPMVFPGAH QYMPPMALGM NSGCIPAAQG LSQMRRLPYM NHPMPNHIPL
301: NSSPAMNPMN PLNTVNQFQN GHLREASNHF LHLDDGRAAV PRVPRPGPHV YGHQIAQAEE HNRILEVAAS TVIPTSKAGQ PPTFDGV
101: TSQPSPPPPV ASSGVESSWA GDICSTFCGS NQVPRTPAGI RGKDAALQPE VPSGAGAHDG TSSSGGSGSN YGGSGLPSDS VHVHKRKGMC RDESDSRSER
201: RRDRIKEKMR ALQELIPHCN KTDKASILDE TIEYLKSLQM QVQIMWMTSG MVPMVFPGAH QYMPPMALGM NSGCIPAAQG LSQMRRLPYM NHPMPNHIPL
301: NSSPAMNPMN PLNTVNQFQN GHLREASNHF LHLDDGRAAV PRVPRPGPHV YGHQIAQAEE HNRILEVAAS TVIPTSKAGQ PPTFDGV
001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
Arabidopsis Description
PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.