Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70453 | Canola | nucleus | 100.0 | 100.0 |
| Bra037742.1-P | Field mustard | nucleus | 97.54 | 97.78 |
| CDY30375 | Canola | nucleus | 97.54 | 97.78 |
| CDY14866 | Canola | nucleus | 94.59 | 95.53 |
| CDX83509 | Canola | nucleus | 75.18 | 74.09 |
| CDY42809 | Canola | nucleus | 75.18 | 73.91 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 77.64 | 66.95 |
| CDY00603 | Canola | nucleus, plastid | 39.56 | 58.76 |
| CDY67566 | Canola | nucleus, plastid | 39.56 | 58.76 |
| CDY06026 | Canola | nucleus | 61.18 | 56.33 |
| CDX71916 | Canola | nucleus | 61.18 | 56.21 |
| CDY37185 | Canola | mitochondrion | 10.32 | 42.86 |
| TraesCS2A01G253900.2 | Wheat | nucleus | 28.99 | 32.96 |
| TraesCS2B01G273500.1 | Wheat | nucleus | 28.99 | 32.96 |
| Solyc07g043580.2.1 | Tomato | nucleus | 39.31 | 32.32 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 31.45 | 32.32 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 28.75 | 32.32 |
| Os03t0782500-01 | Rice | nucleus | 31.94 | 31.71 |
| KRH45975 | Soybean | nucleus | 40.79 | 31.62 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 42.51 | 31.0 |
| TraesCS5B01G422000.1 | Wheat | nucleus | 31.2 | 30.98 |
| PGSC0003DMT400041156 | Potato | nucleus | 39.31 | 30.95 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 31.2 | 30.38 |
| KRG99030 | Soybean | nucleus | 39.8 | 29.62 |
| Zm00001d034298_P001 | Maize | nucleus | 30.47 | 29.38 |
| KRH73584 | Soybean | nucleus | 40.05 | 29.0 |
| KRH14535 | Soybean | nucleus | 40.05 | 29.0 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 29.48 | 28.57 |
| OQU88421 | Sorghum | nucleus | 28.5 | 28.09 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 29.24 | 27.67 |
| Zm00001d013130_P001 | Maize | nucleus | 25.55 | 26.87 |
| Os07t0143200-01 | Rice | nucleus | 26.54 | 26.09 |
| CDY24734 | Canola | plastid | 8.6 | 24.65 |
| CDY31989 | Canola | nucleus | 28.01 | 23.95 |
| CDY35224 | Canola | nucleus | 14.74 | 23.17 |
| CDY65390 | Canola | nucleus | 11.79 | 22.97 |
| CDY01438 | Canola | nucleus, plastid | 12.29 | 22.94 |
| CDY05725 | Canola | nucleus | 28.5 | 22.88 |
| CDY12804 | Canola | nucleus, plastid | 12.04 | 22.69 |
| CDY35220 | Canola | nucleus | 20.64 | 22.64 |
| CDY20289 | Canola | nucleus | 11.55 | 22.27 |
| CDY06870 | Canola | nucleus | 24.57 | 21.98 |
| CDX91917 | Canola | nucleus | 18.67 | 21.9 |
| CDX83214 | Canola | nucleus | 18.43 | 21.55 |
| CDY06865 | Canola | nucleus | 18.43 | 20.89 |
| CDY06867 | Canola | nucleus | 24.57 | 20.75 |
| CDX69281 | Canola | nucleus, plastid | 17.69 | 20.63 |
| CDY44048 | Canola | nucleus, plastid | 17.2 | 20.53 |
| CDX67873 | Canola | nucleus | 15.48 | 20.52 |
| CDY22448 | Canola | nucleus, plastid | 17.44 | 20.17 |
| CDX75629 | Canola | nucleus | 16.95 | 19.94 |
| CDX74328 | Canola | nucleus | 18.92 | 19.9 |
| CDY65446 | Canola | nucleus | 15.97 | 19.64 |
| CDY21498 | Canola | nucleus | 18.43 | 19.38 |
| CDY22636 | Canola | nucleus | 22.11 | 18.33 |
| CDX80064 | Canola | nucleus | 17.94 | 18.25 |
| CDX94963 | Canola | nucleus | 22.11 | 18.07 |
| CDY06358 | Canola | nucleus | 21.62 | 17.92 |
| CDY11836 | Canola | nucleus | 12.53 | 17.83 |
| CDY64745 | Canola | nucleus | 21.87 | 17.73 |
| CDY66254 | Canola | nucleus | 17.2 | 17.5 |
| CDX83349 | Canola | nucleus | 17.2 | 17.33 |
| CDY46133 | Canola | nucleus | 8.11 | 17.28 |
| KXG37432 | Sorghum | plastid | 20.39 | 17.22 |
| CDY55014 | Canola | nucleus | 12.04 | 16.95 |
| CDX88653 | Canola | nucleus | 12.29 | 16.67 |
| CDY62262 | Canola | nucleus | 12.29 | 16.56 |
| CDY28232 | Canola | nucleus | 13.27 | 16.51 |
| CDX68710 | Canola | nucleus | 13.27 | 16.51 |
| CDX91293 | Canola | nucleus | 12.04 | 16.44 |
| CDY21898 | Canola | nucleus | 12.04 | 16.28 |
| CDY50911 | Canola | nucleus | 10.81 | 16.24 |
| CDY02785 | Canola | nucleus | 11.79 | 16.22 |
| CDY22062 | Canola | nucleus | 12.04 | 16.12 |
| CDY18011 | Canola | nucleus | 12.04 | 16.12 |
| CDX76616 | Canola | extracellular | 14.0 | 15.92 |
| CDY32733 | Canola | nucleus | 11.79 | 15.89 |
| CDX97278 | Canola | nucleus | 11.55 | 15.72 |
| CDY34780 | Canola | nucleus | 13.02 | 15.68 |
| CDY11401 | Canola | extracellular | 13.51 | 15.62 |
| CDX90930 | Canola | nucleus | 11.79 | 15.48 |
| CDY18143 | Canola | nucleus | 11.55 | 15.36 |
| CDX76819 | Canola | nucleus | 12.78 | 15.29 |
| CDY35222 | Canola | nucleus | 21.62 | 15.25 |
| CDX89919 | Canola | nucleus | 11.3 | 14.79 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.39 | 12.81 |
| CDY46132 | Canola | endoplasmic reticulum | 4.42 | 10.23 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:A0A078GWP9 | UniProt:A0A078GWP9 | EnsemblPlants:CDY29961 |
| ProteinID:CDY29961 | ProteinID:CDY29961.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00044478001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE9A1B | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g40470DBnaC01g40470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWP9]
Coordinates
chrLK032247:+:91950..94373
Molecular Weight (calculated)
45860.8 Da
IEP (calculated)
8.244
GRAVY (calculated)
-0.847
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHQGWNFEE NCNLSNNRRS SLRPQDELVE LLWRDGQVVL QSQTNREQTQ AQTVKHDHHQ ETLRSQTFLD DQETVSWLQY PPYEDQFITD GFSSHFFSTG
101: NPLERPAPET VKHEAGPDPP DQAMPPPKFR LTNSSSSVKE LGKEQYSVVT VGPSHCGSSQ SHNNLDVSMR HDRSKTVNER LYHNAGSSSG GSSGCSFGKN
201: IKEMAGVQSI TTDRKRKHII DTDGYVSQSD VIGNKSNQPS GSTRRSRAAE VHNLSERRRR DRINERMKTL QELIPHCTKT DKASILDEAI DYMKSLKLQL
301: QVMWMGNGMV AAATAPMMLP GVQPQPFIRQ MQSPVQLPRF PVMNNPGIFC QNPTQNQVFS NWFDRYIGVF PQMQAAPQPM AMLRFGSQAG QQSQQPSAPT
401: KTTDGSR
101: NPLERPAPET VKHEAGPDPP DQAMPPPKFR LTNSSSSVKE LGKEQYSVVT VGPSHCGSSQ SHNNLDVSMR HDRSKTVNER LYHNAGSSSG GSSGCSFGKN
201: IKEMAGVQSI TTDRKRKHII DTDGYVSQSD VIGNKSNQPS GSTRRSRAAE VHNLSERRRR DRINERMKTL QELIPHCTKT DKASILDEAI DYMKSLKLQL
301: QVMWMGNGMV AAATAPMMLP GVQPQPFIRQ MQSPVQLPRF PVMNNPGIFC QNPTQNQVFS NWFDRYIGVF PQMQAAPQPM AMLRFGSQAG QQSQQPSAPT
401: KTTDGSR
001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
Arabidopsis Description
PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.