Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007863.1-P | Field mustard | nucleus | 94.41 | 94.97 |
| CDY34780 | Canola | nucleus | 94.12 | 94.67 |
| CDY20289 | Canola | nucleus | 49.41 | 79.62 |
| AT2G24260.1 | Thale cress | nucleus | 80.88 | 78.57 |
| CDY46133 | Canola | nucleus | 42.06 | 74.87 |
| CDY46132 | Canola | endoplasmic reticulum | 36.47 | 70.45 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 40.0 | 67.0 |
| CDY28232 | Canola | nucleus | 55.59 | 57.8 |
| CDX68710 | Canola | nucleus | 55.0 | 57.19 |
| CDY55014 | Canola | nucleus | 37.94 | 44.64 |
| CDY11836 | Canola | nucleus | 37.35 | 44.41 |
| CDY02785 | Canola | nucleus | 37.94 | 43.58 |
| CDX88653 | Canola | nucleus | 37.65 | 42.67 |
| CDY32733 | Canola | nucleus | 37.65 | 42.38 |
| CDY62262 | Canola | nucleus | 37.65 | 42.38 |
| CDY37185 | Canola | mitochondrion | 11.18 | 38.78 |
| CDX91293 | Canola | nucleus | 32.06 | 36.58 |
| CDY21898 | Canola | nucleus | 32.35 | 36.54 |
| CDY22062 | Canola | nucleus | 32.35 | 36.18 |
| CDY18011 | Canola | nucleus | 32.06 | 35.86 |
| CDX97278 | Canola | nucleus | 30.88 | 35.12 |
| CDX90930 | Canola | nucleus | 31.76 | 34.84 |
| CDY18143 | Canola | nucleus | 30.88 | 34.31 |
| CDX89919 | Canola | nucleus | 30.88 | 33.76 |
| CDY24734 | Canola | plastid | 10.59 | 25.35 |
| CDY12804 | Canola | nucleus, plastid | 13.53 | 21.3 |
| CDY01438 | Canola | nucleus, plastid | 13.53 | 21.1 |
| CDY65390 | Canola | nucleus | 11.76 | 19.14 |
| CDY35224 | Canola | nucleus | 13.53 | 17.76 |
| CDY67566 | Canola | nucleus, plastid | 13.82 | 17.15 |
| CDY00603 | Canola | nucleus, plastid | 13.82 | 17.15 |
| CDX91917 | Canola | nucleus | 15.29 | 14.99 |
| CDY44048 | Canola | nucleus, plastid | 15.0 | 14.96 |
| CDX83214 | Canola | nucleus | 15.29 | 14.94 |
| CDX69281 | Canola | nucleus, plastid | 15.29 | 14.9 |
| CDX75629 | Canola | nucleus | 15.0 | 14.74 |
| CDY22448 | Canola | nucleus, plastid | 15.0 | 14.49 |
| CDX74328 | Canola | nucleus | 15.29 | 13.44 |
| CDX67873 | Canola | nucleus | 12.06 | 13.36 |
| CDX83509 | Canola | nucleus | 16.18 | 13.32 |
| CDY35220 | Canola | nucleus | 14.41 | 13.21 |
| CDY21498 | Canola | nucleus | 14.71 | 12.92 |
| CDY14866 | Canola | nucleus | 15.29 | 12.9 |
| CDY42809 | Canola | nucleus | 15.59 | 12.8 |
| CDX70453 | Canola | nucleus | 15.29 | 12.78 |
| CDY29961 | Canola | nucleus | 15.29 | 12.78 |
| CDX80064 | Canola | nucleus | 15.0 | 12.75 |
| CDY31989 | Canola | nucleus | 17.65 | 12.61 |
| CDY30375 | Canola | nucleus | 15.0 | 12.56 |
| CDY06865 | Canola | nucleus | 13.24 | 12.53 |
| CDY06870 | Canola | nucleus | 16.76 | 12.53 |
| CDY05725 | Canola | nucleus | 18.53 | 12.43 |
| CDY65446 | Canola | nucleus | 12.06 | 12.39 |
| CDY66254 | Canola | nucleus | 14.41 | 12.25 |
| CDY50911 | Canola | nucleus | 9.71 | 12.18 |
| CDX83349 | Canola | nucleus | 14.41 | 12.13 |
| CDY06867 | Canola | nucleus | 16.76 | 11.83 |
| CDY06026 | Canola | nucleus | 15.29 | 11.76 |
| CDX71916 | Canola | nucleus | 15.29 | 11.74 |
| CDY11401 | Canola | extracellular | 11.76 | 11.36 |
| CDY06358 | Canola | nucleus | 16.18 | 11.2 |
| CDX76616 | Canola | extracellular | 11.76 | 11.17 |
| CDY22636 | Canola | nucleus | 15.88 | 11.0 |
| CDX94963 | Canola | nucleus | 15.59 | 10.64 |
| CDY64745 | Canola | nucleus | 15.59 | 10.56 |
| CDY35222 | Canola | nucleus | 16.18 | 9.53 |
Protein Annotations
| EnsemblPlants:CDX76819 | EnsemblPlantsGene:GSBRNA2T00127322001 | Gene3D:4.10.280.10 | GO:A0A078CLA9 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF28 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX76819 | ProteinID:CDX76819.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDD041 | MapMan:15.5.32 | : |
Description
BnaC08g34050D
Coordinates
chrLK031808:+:1270337..1273215
Molecular Weight (calculated)
35833.3 Da
IEP (calculated)
6.650
GRAVY (calculated)
-0.415
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNSSLLTPS SSSHVQTPTT TFDHEDFLDQ IFASSPWPSD EAHPPPPPPP SSDGFVDSRH QQIMMMPLPS HHQNEVVDGS SVHSLYNGFS AGGSLPFHIP
101: QGTVGGMMNQ QGQALTQKQT QPQVSASIAT GGTAAAPPQS RTKVRARRGQ ATDPHSIAER LRRERIAERM KGLQELVPNG NKTDKASMLD EIIDYVKFLQ
201: LQVKVLSMSR LGGGASNSQI SEENTSSAVA GGNQATGNSN DSLTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN TLIPGAAGGV
301: GGHPSSPNLS GMTVQSTNKV TLSGNGVTEG SPPLVVKEAV
101: QGTVGGMMNQ QGQALTQKQT QPQVSASIAT GGTAAAPPQS RTKVRARRGQ ATDPHSIAER LRRERIAERM KGLQELVPNG NKTDKASMLD EIIDYVKFLQ
201: LQVKVLSMSR LGGGASNSQI SEENTSSAVA GGNQATGNSN DSLTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN TLIPGAAGGV
301: GGHPSSPNLS GMTVQSTNKV TLSGNGVTEG SPPLVVKEAV
001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA
Arabidopsis Description
BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.