Factsheet for AT2G24260.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007863.1-P	Field mustard	nucleus	78.29	81.07
CDY34780	Canola	nucleus	78.29	81.07
CDX76819	Canola	nucleus	78.57	80.88
AT4G30980.2	Thale cress	nucleus, plastid	58.57	57.26
AT5G58010.1	Thale cress	nucleus	40.0	47.14
AT4G02590.1	Thale cress	nucleus	31.43	35.48
AT1G03040.3	Thale cress	nucleus	30.29	31.83
AT5G67110.1	Thale cress	nucleus	14.57	24.29
AT4G36930.1	Thale cress	nucleus	15.71	14.75
AT4G28815.1	Thale cress	vacuole	12.57	14.33
AT4G00050.1	Thale cress	nucleus	16.29	14.29
AT3G62090.2	Thale cress	nucleus	14.0	13.5
AT2G20180.2	Thale cress	nucleus	18.0	13.18
AT2G43010.5	Thale cress	extracellular, vacuole	17.71	13.14
AT4G28790.1	Thale cress	nucleus	15.14	12.83
AT3G59060.2	Thale cress	nucleus	16.0	12.61
AT2G46970.1	Thale cress	nucleus	14.86	12.5
AT1G09530.3	Thale cress	nucleus	17.43	11.64
AT4G28811.1	Thale cress	nucleus	17.71	11.4
AT4G28800.2	Thale cress	nucleus	14.57	11.16

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:816961	ProteinID:AAD03387.1	ProteinID:AEC07551.1	EMBL:AF488599
EMBL:AK176370	EMBL:AK176390	ArrayExpress:AT2G24260	EnsemblPlantsGene:AT2G24260	RefSeq:AT2G24260	TAIR:AT2G24260
RefSeq:AT2G24260-TAIR-G	EnsemblPlants:AT2G24260.1	TAIR:AT2G24260.1	EMBL:BT026512	GO:GO:0000003	GO:GO:0001046
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006366	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007
GO:GO:0045944	GO:GO:0046983	GO:GO:0048235	GO:GO:0048765	GO:GO:0048767	GO:GO:0055046
GO:GO:0080147	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	Symbol:LRL1	RefSeq:NP_180003.1
PFAM:PF00010	PO:PO:0000230	PO:PO:0000256	PO:PO:0000262	PO:PO:0000293	PO:PO:0007611
PO:PO:0007616	PO:PO:0009005	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009046
PO:PO:0009047	PO:PO:0025281	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF28	UniProt:Q9ZUG9
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00000A0674	InterPro:bHLH_dom	SEG:seg	:

Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]

Coordinates

chr2:-:10319213..10322423

Molecular Weight (calculated)

36524.0 Da

IEP (calculated)

6.862

GRAVY (calculated)

-0.356

Length

350 amino acids

Sequence
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.