Factsheet for AT4G28800.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G28815.1	Thale cress	vacuole	44.2	65.8
AT4G28811.1	Thale cress	nucleus	66.74	56.07
CDY06865	Canola	nucleus	43.33	55.15
CDY06867	Canola	nucleus	57.77	54.77
CDY06870	Canola	nucleus	53.61	53.85
CDY35224	Canola	nucleus	28.45	50.19
Bra011061.1-P	Field mustard	nucleus	52.52	46.42
CDY35220	Canola	nucleus	37.64	46.36
CDY35222	Canola	nucleus	50.55	40.03
AT2G20180.2	Thale cress	nucleus	41.58	39.75
Bra011062.1-P	Field mustard	cytosol	39.17	39.08
AT4G28790.1	Thale cress	nucleus	33.92	37.53
Os04t0618600-01	Rice	nucleus	10.5	26.52
Solyc04g007430.1.1	Tomato	nucleus	10.07	25.0
TraesCS2D01G461900.1	Wheat	nucleus	8.53	24.84
EES11436	Sorghum	nucleus	10.07	24.47
Zm00001d002288_P002	Maize	nucleus	10.94	23.36
AT5G67110.1	Thale cress	nucleus	10.72	23.33
HORVU2Hr1G104040.6	Barley	nucleus	9.41	22.87
TraesCS2A01G461700.2	Wheat	nucleus	9.19	22.34
TraesCS2B01G483300.1	Wheat	nucleus	9.19	22.34
TraesCS2D01G461700.3	Wheat	nucleus	9.19	22.34
PGSC0003DMT400015377	Potato	nucleus	9.63	21.67
Zm00001d026317_P003	Maize	nucleus, plastid	10.28	19.83
AT2G43010.5	Thale cress	extracellular, vacuole	19.69	19.07
AT3G59060.2	Thale cress	nucleus	18.38	18.92
AT2G46970.1	Thale cress	nucleus	16.19	17.79
AT4G00050.1	Thale cress	nucleus	15.32	17.54
AT3G62090.2	Thale cress	nucleus	13.35	16.8
AT1G09530.3	Thale cress	nucleus	19.04	16.6
AT5G58010.1	Thale cress	nucleus	10.72	16.5
AT4G36930.1	Thale cress	nucleus	12.91	15.82
AT4G30980.2	Thale cress	nucleus, plastid	11.82	15.08
AT2G24260.1	Thale cress	nucleus	11.16	14.57
AT4G02590.1	Thale cress	nucleus	8.1	11.94
AT1G03040.3	Thale cress	nucleus	8.1	11.11

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:829001	UniProt:A0A1P8B7L8	ProteinID:ANM67571.1	ArrayExpress:AT4G28800
EnsemblPlantsGene:AT4G28800	RefSeq:AT4G28800	TAIR:AT4G28800	RefSeq:AT4G28800-TAIR-G	EnsemblPlants:AT4G28800.2	Unigene:At.71648
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	RefSeq:NP_001329392.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF145	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000848DF67
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT4G28800]

Coordinates

chr4:+:14221632..14224116

Molecular Weight (calculated)

50036.6 Da

IEP (calculated)

8.343

GRAVY (calculated)

-0.758

Length

457 amino acids

Sequence
(BLAST)

001: MSSWLHHSHP GVTSTPASSV SLPPPPNAPR EDDIVELLWQ SGQVVGTNQT HRQSYDPPPI LRGSGSGRGE ENAPLSQPPP HLHQQNLFIQ EGEMYSWLHH
101: SYRQNYFCSE LLNSTPATHP QSSISLAPRQ TIATRRAENF MNFSWLRGNI FTGGRVDEAG PSFSVVRESM QVGSNTTPPS SSATESCVIP ATEGTASRVS
201: GTLAAHDLGR KGKAVAVEAA GTPSSGVCKA ETEPVQIQPA TESKLKAREE THGTEEARGS TSRKRSRTAE MHNLAERRRR EKINEKMKTL QQLIPRCNKS
301: TKVSTLDDAI EYVKSLQSQI QGMMSPMMNA GNTQQFMPHM AMDMNRPPPF IPFPGTSFPM PAQMAGVGPS YPAPRYPFPN IQTFDPSRVR LPSPQPNPVS
401: NQPQFPAYMN PYSQFAGPHQ LQQPPPPPFQ GQTTSQLSSG QASSSKEPED QENQPTA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.