Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011237.1-P | Field mustard | plastid | 46.09 | 76.39 |
| CDY28232 | Canola | nucleus | 62.85 | 68.81 |
| CDX68710 | Canola | nucleus | 62.85 | 68.81 |
| AT2G24260.1 | Thale cress | nucleus | 57.26 | 58.57 |
| AT5G58010.1 | Thale cress | nucleus | 38.27 | 46.13 |
| AT4G02590.1 | Thale cress | nucleus | 29.89 | 34.52 |
| AT1G03040.3 | Thale cress | nucleus | 29.05 | 31.23 |
| AT5G67110.1 | Thale cress | nucleus | 14.53 | 24.76 |
| AT4G36930.1 | Thale cress | nucleus | 15.08 | 14.48 |
| AT4G28815.1 | Thale cress | vacuole | 12.29 | 14.33 |
| AT4G00050.1 | Thale cress | nucleus | 15.64 | 14.04 |
| AT4G28790.1 | Thale cress | nucleus | 15.36 | 13.32 |
| AT3G62090.2 | Thale cress | nucleus | 13.41 | 13.22 |
| AT2G20180.2 | Thale cress | nucleus | 17.6 | 13.18 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 16.2 | 12.29 |
| AT2G46970.1 | Thale cress | nucleus | 14.25 | 12.26 |
| AT4G28811.1 | Thale cress | nucleus | 18.16 | 11.95 |
| AT4G28800.2 | Thale cress | nucleus | 15.08 | 11.82 |
| AT3G59060.2 | Thale cress | nucleus | 14.25 | 11.49 |
| AT1G09530.3 | Thale cress | nucleus | 16.48 | 11.26 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:829223 | UniProt:A0A1P8B7F0 | ProteinID:ANM67525.1 | ArrayExpress:AT4G30980 |
| EnsemblPlantsGene:AT4G30980 | RefSeq:AT4G30980 | TAIR:AT4G30980 | RefSeq:AT4G30980-TAIR-G | EnsemblPlants:AT4G30980.2 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| Symbol:LRL2 | RefSeq:NP_194827.3 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF28 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00084846A5 | InterPro:bHLH_dom | SEG:seg | : |
Description
LRL2LJRHL1-like 2 [Source:TAIR;Acc:AT4G30980]
Coordinates
chr4:-:15079118..15081775
Molecular Weight (calculated)
38584.3 Da
IEP (calculated)
9.395
GRAVY (calculated)
-0.590
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKSNPSNLK YYNLHPSFKH HKALNLKRHF NNIHFHSHSP PKKKKTEAMN SSSLLTPSSS PSPHLQSPAT FDHDDFLHHI FSSTPWPSSV LDDTPPPTSD
101: CAPVTGFHHH DADSRNQITM IPLSHNHPND ALFNGFSTGS LPFHLPQGSG GQTQTQSQAT ASATTGGATA QPQTKPKVRA RRGQATDPHS IAERLRRERI
201: AERMKSLQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAS ASSQISEDAG GSHENTSSSG EAKMTEHQVA KLMEEDMGSA MQYLQGKGLC
301: LMPISLATTI STATCPSRSP FVKDTGVPLS PNLSTTIVAN GNGSSLVTVK DAPSVSKP
101: CAPVTGFHHH DADSRNQITM IPLSHNHPND ALFNGFSTGS LPFHLPQGSG GQTQTQSQAT ASATTGGATA QPQTKPKVRA RRGQATDPHS IAERLRRERI
201: AERMKSLQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAS ASSQISEDAG GSHENTSSSG EAKMTEHQVA KLMEEDMGSA MQYLQGKGLC
301: LMPISLATTI STATCPSRSP FVKDTGVPLS PNLSTTIVAN GNGSSLVTVK DAPSVSKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.