Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011237.1-P | Field mustard | plastid | 65.75 | 99.54 |
| CDX68710 | Canola | nucleus | 96.33 | 96.33 |
| AT4G30980.2 | Thale cress | nucleus, plastid | 68.81 | 62.85 |
| CDY20289 | Canola | nucleus | 37.0 | 57.35 |
| CDX76819 | Canola | nucleus | 57.8 | 55.59 |
| CDY34780 | Canola | nucleus | 57.19 | 55.33 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 31.5 | 50.74 |
| CDY46133 | Canola | nucleus | 29.36 | 50.26 |
| CDY46132 | Canola | endoplasmic reticulum | 26.91 | 50.0 |
| CDY11836 | Canola | nucleus | 39.45 | 45.1 |
| CDY55014 | Canola | nucleus | 39.45 | 44.64 |
| CDY02785 | Canola | nucleus | 40.06 | 44.26 |
| CDY32733 | Canola | nucleus | 39.76 | 43.05 |
| CDY62262 | Canola | nucleus | 39.76 | 43.05 |
| CDX88653 | Canola | nucleus | 39.45 | 43.0 |
| CDY37185 | Canola | mitochondrion | 11.62 | 38.78 |
| CDX91293 | Canola | nucleus | 32.42 | 35.57 |
| CDY21898 | Canola | nucleus | 32.11 | 34.88 |
| CDY18011 | Canola | nucleus | 32.11 | 34.54 |
| CDY22062 | Canola | nucleus | 31.8 | 34.21 |
| CDX97278 | Canola | nucleus | 31.19 | 34.11 |
| CDY18143 | Canola | nucleus | 31.8 | 33.99 |
| CDX89919 | Canola | nucleus | 31.8 | 33.44 |
| CDX90930 | Canola | nucleus | 31.5 | 33.23 |
| CDY24734 | Canola | plastid | 11.01 | 25.35 |
| CDY12804 | Canola | nucleus, plastid | 13.46 | 20.37 |
| CDY01438 | Canola | nucleus, plastid | 13.46 | 20.18 |
| CDY65390 | Canola | nucleus | 12.84 | 20.1 |
| CDY35224 | Canola | nucleus | 14.37 | 18.15 |
| CDY67566 | Canola | nucleus, plastid | 14.68 | 17.52 |
| CDY00603 | Canola | nucleus, plastid | 14.68 | 17.52 |
| CDY44048 | Canola | nucleus, plastid | 17.13 | 16.42 |
| CDY22448 | Canola | nucleus, plastid | 17.43 | 16.19 |
| CDX69281 | Canola | nucleus, plastid | 16.51 | 15.47 |
| CDX75629 | Canola | nucleus | 16.21 | 15.32 |
| CDX83214 | Canola | nucleus | 16.21 | 15.23 |
| CDX91917 | Canola | nucleus | 15.9 | 14.99 |
| CDX83509 | Canola | nucleus | 17.43 | 13.8 |
| CDX74328 | Canola | nucleus | 16.21 | 13.7 |
| CDX67873 | Canola | nucleus | 12.84 | 13.68 |
| CDY35220 | Canola | nucleus | 15.29 | 13.48 |
| CDY31989 | Canola | nucleus | 19.57 | 13.45 |
| CDY14866 | Canola | nucleus | 16.51 | 13.4 |
| CDX70453 | Canola | nucleus | 16.51 | 13.27 |
| CDY29961 | Canola | nucleus | 16.51 | 13.27 |
| CDY05725 | Canola | nucleus | 20.49 | 13.21 |
| CDY21498 | Canola | nucleus | 15.6 | 13.18 |
| CDY06865 | Canola | nucleus | 14.37 | 13.09 |
| CDY30375 | Canola | nucleus | 16.21 | 13.05 |
| CDX80064 | Canola | nucleus | 15.9 | 13.0 |
| CDY65446 | Canola | nucleus | 13.15 | 12.99 |
| CDY50911 | Canola | nucleus | 10.7 | 12.92 |
| CDX83349 | Canola | nucleus | 15.9 | 12.87 |
| CDY42809 | Canola | nucleus | 16.21 | 12.8 |
| CDY06870 | Canola | nucleus | 17.43 | 12.53 |
| CDY66254 | Canola | nucleus | 15.29 | 12.5 |
| CDY06358 | Canola | nucleus | 18.65 | 12.42 |
| CDY22636 | Canola | nucleus | 18.65 | 12.42 |
| CDX94963 | Canola | nucleus | 18.35 | 12.05 |
| CDY64745 | Canola | nucleus | 18.35 | 11.95 |
| CDY06867 | Canola | nucleus | 17.13 | 11.62 |
| CDY11401 | Canola | extracellular | 12.23 | 11.36 |
| CDX71916 | Canola | nucleus | 15.29 | 11.29 |
| CDX76616 | Canola | extracellular | 12.23 | 11.17 |
| CDY06026 | Canola | nucleus | 14.98 | 11.09 |
| CDY35222 | Canola | nucleus | 16.21 | 9.19 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078GSV3 | UniProt:A0A078GSV3 | EnsemblPlants:CDY28232 | ProteinID:CDY28232 |
| ProteinID:CDY28232.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00039964001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF28 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEB08F | InterPro:bHLH_dom | SEG:seg |
Description
BnaA01g06170DBnaA01g06170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSV3]
Coordinates
chrLK032216:-:401610..404121
Molecular Weight (calculated)
34546.4 Da
IEP (calculated)
6.799
GRAVY (calculated)
-0.418
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSSLLTPSS SSSSPHHLQS PATFDHDDFL QNFFSSAPWP SSALDDDAPP PTSDSSLAGF HHHDVDSRNQ ITMIPLSHHN PNDAVDVNAL YSGFSAGSLP
101: FHFPQGSGGG VIKQSHTQTQ SQATASTTTG GTAATPQTKP KVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNGNK TDKASMLDEI IDYVKFLQLQ
201: VKVLSMSRLG GAASVSSQIS EDAGGSNENT SGENQTAAKM TEHQVAKLME EDMGSAMQYL QGKGLCLMPI SLATTISTAT CPSRNPLISA VKEAGVPLSP
301: NAATTPLVNV KGASVVTVKD ASSVSKP
101: FHFPQGSGGG VIKQSHTQTQ SQATASTTTG GTAATPQTKP KVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNGNK TDKASMLDEI IDYVKFLQLQ
201: VKVLSMSRLG GAASVSSQIS EDAGGSNENT SGENQTAAKM TEHQVAKLME EDMGSAMQYL QGKGLCLMPI SLATTISTAT CPSRNPLISA VKEAGVPLSP
301: NAATTPLVNV KGASVVTVKD ASSVSKP
001: MNSSSLLTPS SSPSPHLQSP ATFDHDDFLH HIFSSTPWPS SVLDDTPPPT SDCAPVTGFH HHDADSRNQI TMIPLSHNHP NDALFNGFST GSLPFHLPQG
101: SGGQTQTQSQ ATASATTGGA TAQPQTKPKV RARRGQATDP HSIAERLRRE RIAERMKSLQ ELVPNGNKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA
201: ASASSQISED AGGSHENTSS SGEAKMTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT TISTATCPSR SPFVKDTGVP LSPNLSTTIV ANGNGSSLVT
301: VKDAPSVSKP
101: SGGQTQTQSQ ATASATTGGA TAQPQTKPKV RARRGQATDP HSIAERLRRE RIAERMKSLQ ELVPNGNKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA
201: ASASSQISED AGGSHENTSS SGEAKMTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT TISTATCPSR SPFVKDTGVP LSPNLSTTIV ANGNGSSLVT
301: VKDAPSVSKP
Arabidopsis Description
LRL2LJRHL1-like 2 [Source:TAIR;Acc:AT4G30980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.