Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46970.1 | CDX87210 | AT5G61380.1 | 11828029 |
| AT2G46970.1 | CDY02151 | AT5G61380.1 | 11828029 |
| AT2G46970.1 | CDY64140 | AT5G61380.1 | 11828029 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80064 | Canola | nucleus | 95.5 | 95.5 |
| Bra004489.1-P | Field mustard | nucleus | 95.25 | 95.25 |
| CDX83349 | Canola | nucleus | 75.25 | 74.5 |
| CDY50911 | Canola | nucleus | 49.75 | 73.43 |
| AT2G46970.1 | Thale cress | nucleus | 73.0 | 70.19 |
| CDX67873 | Canola | nucleus | 36.5 | 47.56 |
| CDY65446 | Canola | nucleus | 38.5 | 46.53 |
| CDX76616 | Canola | extracellular | 37.75 | 42.18 |
| CDY11401 | Canola | extracellular | 35.75 | 40.62 |
| CDY37185 | Canola | mitochondrion | 9.25 | 37.76 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 13.75 | 27.5 |
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 10.25 | 22.78 |
| CDY67566 | Canola | nucleus, plastid | 15.5 | 22.63 |
| CDY00603 | Canola | nucleus, plastid | 15.5 | 22.63 |
| CDY65390 | Canola | nucleus | 11.5 | 22.01 |
| CDY35224 | Canola | nucleus | 14.25 | 22.01 |
| CDY12804 | Canola | nucleus, plastid | 11.25 | 20.83 |
| CDX91917 | Canola | nucleus | 18.0 | 20.75 |
| CDX83214 | Canola | nucleus | 18.0 | 20.69 |
| CDY01438 | Canola | nucleus, plastid | 11.25 | 20.64 |
| CDY31989 | Canola | nucleus | 23.5 | 19.75 |
| CDY24734 | Canola | plastid | 7.0 | 19.72 |
| CDX74328 | Canola | nucleus | 18.75 | 19.38 |
| CDY21498 | Canola | nucleus | 18.5 | 19.12 |
| CDY05725 | Canola | nucleus | 23.5 | 18.54 |
| CDY20289 | Canola | nucleus | 9.5 | 18.01 |
| CDY44048 | Canola | nucleus, plastid | 15.25 | 17.89 |
| CDX94963 | Canola | nucleus | 22.25 | 17.87 |
| CDY64745 | Canola | nucleus | 22.25 | 17.73 |
| CDY22636 | Canola | nucleus | 21.75 | 17.72 |
| CDX83509 | Canola | nucleus | 18.25 | 17.68 |
| CDY55014 | Canola | nucleus | 12.75 | 17.65 |
| CDX75629 | Canola | nucleus | 15.25 | 17.63 |
| CDY14866 | Canola | nucleus | 17.75 | 17.62 |
| KRH33663 | Soybean | nucleus | 19.75 | 17.59 |
| CDY02785 | Canola | nucleus | 13.0 | 17.57 |
| CDY06358 | Canola | nucleus | 21.5 | 17.52 |
| CDY30375 | Canola | nucleus | 17.75 | 17.49 |
| CDY11836 | Canola | nucleus | 12.5 | 17.48 |
| CDY06026 | Canola | nucleus | 19.25 | 17.42 |
| CDX71916 | Canola | nucleus | 19.25 | 17.38 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 21.75 | 17.33 |
| CDY22448 | Canola | nucleus, plastid | 15.25 | 17.33 |
| KRH68348 | Soybean | nucleus | 22.25 | 17.21 |
| CDY29961 | Canola | nucleus | 17.5 | 17.2 |
| CDX70453 | Canola | nucleus | 17.5 | 17.2 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 21.5 | 17.13 |
| CDY42809 | Canola | nucleus | 17.5 | 16.91 |
| CDX69281 | Canola | nucleus, plastid | 14.75 | 16.91 |
| CDY32733 | Canola | nucleus | 12.75 | 16.89 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 21.25 | 16.77 |
| CDX88653 | Canola | nucleus | 12.5 | 16.67 |
| Os05t0139100-01 | Rice | nucleus | 21.0 | 16.63 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 20.5 | 16.63 |
| KRG96615 | Soybean | nucleus | 21.5 | 16.6 |
| CDY62262 | Canola | nucleus | 12.5 | 16.56 |
| Zm00001d024783_P001 | Maize | nucleus | 20.75 | 16.44 |
| CDY06865 | Canola | nucleus | 14.75 | 16.43 |
| CDY06870 | Canola | nucleus | 18.5 | 16.26 |
| CDX68710 | Canola | nucleus | 12.75 | 15.6 |
| CDY28232 | Canola | nucleus | 12.5 | 15.29 |
| CDY18011 | Canola | nucleus | 11.5 | 15.13 |
| CDX91293 | Canola | nucleus | 11.25 | 15.1 |
| CDX97278 | Canola | nucleus | 11.25 | 15.05 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 22.25 | 15.01 |
| CDY35220 | Canola | nucleus | 13.75 | 14.82 |
| Zm00001d040536_P005 | Maize | nucleus | 21.0 | 14.81 |
| CDY22062 | Canola | nucleus | 11.25 | 14.8 |
| CDY21898 | Canola | nucleus | 11.0 | 14.62 |
| CDX90930 | Canola | nucleus | 11.25 | 14.52 |
| CDY34780 | Canola | nucleus | 12.25 | 14.5 |
| CDX76819 | Canola | nucleus | 12.25 | 14.41 |
| KXG32305 | Sorghum | nucleus | 21.25 | 14.07 |
| Os01t0286100-01 | Rice | nucleus | 22.25 | 13.97 |
| CDY18143 | Canola | nucleus | 10.5 | 13.73 |
| CDY06867 | Canola | nucleus | 16.5 | 13.69 |
| CDX89919 | Canola | nucleus | 10.5 | 13.5 |
| Zm00001d008205_P001 | Maize | nucleus | 21.25 | 13.32 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.75 | 13.3 |
| CDY46133 | Canola | nucleus | 6.25 | 13.09 |
| PGSC0003DMT400047079 | Potato | nucleus | 23.0 | 12.99 |
| KXG21255 | Sorghum | nucleus | 22.0 | 12.79 |
| Solyc01g102300.2.1 | Tomato | nucleus | 22.75 | 12.73 |
| CDY46132 | Canola | endoplasmic reticulum | 5.25 | 11.93 |
| CDY35222 | Canola | nucleus | 16.5 | 11.44 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078JHW8 | UniProt:A0A078JHW8 | EnsemblPlants:CDY66254 | ProteinID:CDY66254 |
| ProteinID:CDY66254.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00052385001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EB6E6A | InterPro:bHLH_dom | SEG:seg |
Description
BnaC04g52060DBnaC04g52060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHW8]
Coordinates
chrLK035169:-:15057..17199
Molecular Weight (calculated)
44818.2 Da
IEP (calculated)
8.453
GRAVY (calculated)
-0.760
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKNLCASSS QPNMISPSSS FKPTLNDQDY MELVCENGQI LAKSRKTNNN GYFQNQRRQS ILDLYETEYD ESFKKNIKNL EETQVVPVSG EQTNNKKRTK
101: PSKNELERAL LTGNKRFESP TLNDDSLKGL KNVEVIKAPP DEQSEAVGRS TKLYFTPSSM LSRRTSRDLS ISLKKRKCGD NEEEEEETTY LSNSSDDESD
201: DAKTRVPART RKTMAKRKRS TEVHRLSERK RRHEISKKMH ALQDLLPNCY KDDKVSLLDE AIKCMRTLQL QVQMMSMGNG LIQPSVMLPM GNYSPMGLGM
301: HMGAAATTPS LPQFMPMDVQ GTGFLGINNA SSQMLSAFLN HPTGLIPNSP IFSPLESCSQ QLVTPSCFPE TQTTSFSQFP MSGSTTNFED AMQFRGSSGY
101: PSKNELERAL LTGNKRFESP TLNDDSLKGL KNVEVIKAPP DEQSEAVGRS TKLYFTPSSM LSRRTSRDLS ISLKKRKCGD NEEEEEETTY LSNSSDDESD
201: DAKTRVPART RKTMAKRKRS TEVHRLSERK RRHEISKKMH ALQDLLPNCY KDDKVSLLDE AIKCMRTLQL QVQMMSMGNG LIQPSVMLPM GNYSPMGLGM
301: HMGAAATTPS LPQFMPMDVQ GTGFLGINNA SSQMLSAFLN HPTGLIPNSP IFSPLESCSQ QLVTPSCFPE TQTTSFSQFP MSGSTTNFED AMQFRGSSGY
001: MEAKPLASSS SEPNMISPSS NIKPKLKDED YMELVCENGQ ILAKIRRPKN NGSFQKQRRQ SLLDLYETEY SEGFKKNIKI LGDTQVVPVS QSKPQQDKET
101: NEQMNNNKKK LKSSKIEFER NVSKSNKCVE SSTLIDVSAK GPKNVEVTTA PPDEQSAAVG RSTELYFASS SKFSRGTSRD LSCCSLKRKY GDIEEEESTY
201: LSNNSDDESD DAKTQVHART RKPVTKRKRS TEVHKLYERK RRDEFNKKMR ALQDLLPNCY KDDKASLLDE AIKYMRTLQL QVQMMSMGNG LIRPPTMLPM
301: GHYSPMGLGM HMGAAATPTS IPQFLPMNVQ ATGFPGMNNA PPQMLSFLNH PSGLIPNTPI FSPLENCSQP FVVPSCVSQT QATSFTQFPK SASASNLEDA
401: MQYRGSNGFS YYRSPN
101: NEQMNNNKKK LKSSKIEFER NVSKSNKCVE SSTLIDVSAK GPKNVEVTTA PPDEQSAAVG RSTELYFASS SKFSRGTSRD LSCCSLKRKY GDIEEEESTY
201: LSNNSDDESD DAKTQVHART RKPVTKRKRS TEVHKLYERK RRDEFNKKMR ALQDLLPNCY KDDKASLLDE AIKYMRTLQL QVQMMSMGNG LIRPPTMLPM
301: GHYSPMGLGM HMGAAATPTS IPQFLPMNVQ ATGFPGMNNA PPQMLSFLNH PSGLIPNTPI FSPLENCSQP FVVPSCVSQT QATSFTQFPK SASASNLEDA
401: MQYRGSNGFS YYRSPN
Arabidopsis Description
PIL1Transcription factor PIL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.