CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68583
CDX81342
CDX83121
CDX85799
CDY01443
CDY12799
CDY17765
CDY18636
CDY21597
CDY30593
CDY43559
CDY63952
CDY64847

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	CDX68583	AT3G50330.1	17855426
AT4G36930.1	CDX83121	AT3G50330.1	17855426
AT4G36930.1	CDY17765	AT3G50330.1	17855426
AT4G36930.1	CDY30593	AT3G50330.1	17855426
AT4G36930.1	CDX85799	AT5G09750.1	17855426
AT4G36930.1	CDY21597	AT5G09750.1	17855426
AT4G36930.1	CDY64847	AT5G09750.1	17855426
AT4G36930.1	CDX81342	AT5G67060.1	17855426
AT4G36930.1	CDY01443	AT5G67060.1	17855426
AT4G36930.1	CDY12799	AT5G67060.1	17855426
AT4G36930.1	CDY18636	AT5G67060.1	17855426
AT4G36930.1	CDY43559	AT5G67060.1	17855426
AT4G36930.1	CDY63952	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44048	Canola	nucleus, plastid	86.65	89.44
CDX75629	Canola	nucleus	77.27	78.61
CDX69281	Canola	nucleus, plastid	77.84	78.51
AT4G36930.1	Thale cress	nucleus	80.4	75.87
GSMUA_Achr9P11300_001	Banana	nucleus	12.78	71.43
CDY37185	Canola	mitochondrion	16.76	60.2
TraesCS6A01G190600.1	Wheat	nucleus	18.47	50.39
CDY24734	Canola	plastid	16.19	40.14
CDY12804	Canola	nucleus, plastid	23.58	38.43
CDY01438	Canola	nucleus, plastid	23.3	37.61
PGSC0003DMT400010253	Potato	nucleus	39.2	36.7
Solyc02g093280.2.1	Tomato	nucleus	38.92	36.24
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	19.6	35.03
OQU75890	Sorghum	nucleus	26.14	31.62
GSMUA_Achr8P15670_001	Banana	nucleus	30.97	30.88
GSMUA_Achr10P...	Banana	plastid	29.83	30.61
TraesCS7A01G126900.1	Wheat	nucleus	28.41	30.21
TraesCS7D01G124700.1	Wheat	nucleus	28.98	30.18
TraesCS7B01G026300.1	Wheat	nucleus	28.69	29.79
Os02t0805250-00	Rice	nucleus	23.3	29.29
HORVU7Hr1G026560.2	Barley	nucleus	27.84	28.99
KXG31309	Sorghum	nucleus	23.86	28.77
HORVU6Hr1G088020.4	Barley	nucleus	23.3	27.7
Zm00001d045212_P001	Maize	nucleus	26.42	27.43
TraesCS6D01G357700.1	Wheat	nucleus	23.01	27.27
TraesCS6A01G373500.2	Wheat	nucleus	23.01	26.73
TraesCS6B01G411300.1	Wheat	nucleus	22.16	25.74
Zm00001d018416_P001	Maize	mitochondrion	23.58	25.15
CDY65390	Canola	nucleus	14.49	24.4
CDY00603	Canola	nucleus, plastid	18.18	23.36
CDY67566	Canola	nucleus, plastid	18.18	23.36
CDY35224	Canola	nucleus	15.91	21.62
CDY20289	Canola	nucleus	12.22	20.38
CDX83214	Canola	nucleus	19.6	19.83
CDX91917	Canola	nucleus	19.32	19.6
CDX67873	Canola	nucleus	16.48	18.89
CDY11836	Canola	nucleus	15.34	18.88
CDX74328	Canola	nucleus	20.74	18.86
CDY21498	Canola	nucleus	20.17	18.35
CDY55014	Canola	nucleus	15.06	18.34
CDX88653	Canola	nucleus	15.62	18.33
CDY02785	Canola	nucleus	15.34	18.24
CDY32733	Canola	nucleus	15.62	18.21
CDY14866	Canola	nucleus	20.45	17.87
CDY65446	Canola	nucleus	16.76	17.82
CDY30375	Canola	nucleus	20.45	17.73
CDY31989	Canola	nucleus	23.86	17.65
CDX70453	Canola	nucleus	20.17	17.44
CDY29961	Canola	nucleus	20.17	17.44
CDY28232	Canola	nucleus	16.19	17.43
CDY62262	Canola	nucleus	14.77	17.22
CDX83509	Canola	nucleus	19.89	16.95
CDX68710	Canola	nucleus	15.62	16.82
CDY50911	Canola	nucleus	12.78	16.61
CDY05725	Canola	nucleus	23.86	16.57
CDY35220	Canola	nucleus	17.05	16.17
CDY06870	Canola	nucleus	20.74	16.04
CDY42809	Canola	nucleus	18.75	15.94
CDY06865	Canola	nucleus	16.19	15.88
CDX80064	Canola	nucleus	17.9	15.75
CDY06026	Canola	nucleus	19.6	15.61
CDX71916	Canola	nucleus	19.6	15.58
CDX83349	Canola	nucleus	17.61	15.35
CDY66254	Canola	nucleus	17.33	15.25
CDX91293	Canola	nucleus	12.78	15.1
CDY34780	Canola	nucleus	14.49	15.09
CDX76819	Canola	nucleus	14.49	15.0
CDY22636	Canola	nucleus	20.74	14.87
CDX94963	Canola	nucleus	21.02	14.86
GSMUA_Achr7P20810_001	Banana	nucleus	25.28	14.86
CDY18011	Canola	nucleus	12.78	14.8
CDX97278	Canola	nucleus	12.5	14.72
CDY21898	Canola	nucleus	12.5	14.62
CDY64745	Canola	nucleus	20.74	14.54
CDY22062	Canola	nucleus	12.5	14.47
CDY06358	Canola	nucleus	20.17	14.46
CDY06867	Canola	nucleus	19.6	14.32
CDY20290	Canola	endoplasmic reticulum, extracellular	8.24	14.29
CDX90930	Canola	nucleus	12.5	14.19
CDY46133	Canola	nucleus	7.67	14.14
CDY18143	Canola	nucleus	11.93	13.73
CDX89919	Canola	nucleus	11.93	13.5
CDX76616	Canola	extracellular	13.07	12.85
CDY11401	Canola	extracellular	12.5	12.5
CDY46132	Canola	endoplasmic reticulum	5.97	11.93
CDY35222	Canola	nucleus	18.75	11.44

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078GCN8	UniProt:A0A078GCN8	EnsemblPlants:CDY22448	ProteinID:CDY22448
ProteinID:CDY22448.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00018993001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EEBF87	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaC03g61610DBnaC03g61610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCN8]

Coordinates

chrLK032131:+:433135..434840

Molecular Weight (calculated)

37676.8 Da

IEP (calculated)

6.991

GRAVY (calculated)

-0.539

Length

352 amino acids

Sequence
(BLAST)

001: MADKKLIPSS SSTTSIYDTR SSNNSNHHPP SSSDEISLFL RHIINRSSSP LPSHYSPATA STAEIGVNAD PHADNPRCFV SPQTSKRAAD YSEVLIGSGV
101: GSSSAAACYG FSGGGGNNVA QGNSSGTRVS SSSVGASGNE TDEYDCESEE GVEAVVDDEL LCKSRTSSKR CRAAEVHNLS EKRRRSRINE KMKALQSLIP
201: NSNKTDKASM LDEAIEYLKQ LQLQVQMLTM RNGVNLHPLC LPGTTLHPLQ LSQLRLGVPP EATNDSLFNH TNHFASTSNA PAMVNTGASS YALEPSIRSH
301: FGPFPLLTSP AEMSVEGGLT HPRLNIGHSN TNLTGRQAVF NGQQPDIKDR LN

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.