Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY01443 | Canola | nucleus | 95.87 | 95.43 |
CDY18636 | Canola | nucleus | 77.52 | 82.44 |
CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 77.98 | 82.13 |
CDY43559 | Canola | nucleus | 85.78 | 80.95 |
CDY63952 | Canola | nucleus | 85.32 | 80.52 |
AT5G67060.1 | Thale cress | nucleus | 83.94 | 75.93 |
Solyc12g088790.1.1 | Tomato | nucleus | 37.61 | 67.77 |
CDX68583 | Canola | nucleus | 67.43 | 64.76 |
CDX83121 | Canola | nucleus | 66.97 | 63.48 |
CDY17765 | Canola | nucleus | 65.14 | 62.83 |
CDY30593 | Canola | nucleus | 61.01 | 62.44 |
PGSC0003DMT400048857 | Potato | nucleus | 37.61 | 55.41 |
KRH28464 | Soybean | nucleus | 52.75 | 47.52 |
KRH77007 | Soybean | nucleus | 53.67 | 46.61 |
PGSC0003DMT400010344 | Potato | nucleus | 46.79 | 45.54 |
TraesCS7D01G263400.1 | Wheat | nucleus | 43.12 | 42.73 |
HORVU7Hr1G054880.1 | Barley | nucleus | 43.12 | 42.34 |
TraesCS7A01G262600.1 | Wheat | nucleus | 42.66 | 42.27 |
KRH57944 | Soybean | nucleus | 48.62 | 41.73 |
TraesCS7B01G160500.1 | Wheat | nucleus | 42.2 | 41.63 |
Os09t0455300-01 | Rice | nucleus | 43.12 | 39.83 |
KRH04603 | Soybean | nucleus | 51.38 | 39.72 |
TraesCS5A01G237500.1 | Wheat | nucleus | 41.74 | 38.72 |
TraesCS5D01G244000.1 | Wheat | nucleus | 41.74 | 38.72 |
HORVU5Hr1G068110.1 | Barley | nucleus | 42.2 | 38.66 |
TraesCS5B01G235200.1 | Wheat | nucleus | 41.28 | 38.3 |
TraesCS6A01G142000.1 | Wheat | nucleus | 41.28 | 38.3 |
CDX91916 | Canola | cytosol | 30.73 | 37.64 |
Zm00001d050016_P001 | Maize | nucleus | 41.28 | 37.34 |
Zm00001d020705_P001 | Maize | nucleus | 41.28 | 37.19 |
CDX85799 | Canola | nucleus | 36.24 | 36.92 |
CDX74329 | Canola | cytosol | 30.73 | 36.81 |
CDY64847 | Canola | nucleus | 36.24 | 36.74 |
GSMUA_Achr9P15380_001 | Banana | nucleus | 41.28 | 36.73 |
EER96848 | Sorghum | nucleus | 42.66 | 35.63 |
Zm00001d031781_P001 | Maize | nucleus | 40.37 | 35.06 |
Zm00001d005841_P001 | Maize | nucleus | 38.53 | 34.71 |
EES15124 | Sorghum | nucleus | 42.2 | 34.2 |
CDY21597 | Canola | nucleus | 34.86 | 34.08 |
CDY55900 | Canola | nucleus, plastid | 21.56 | 26.55 |
CDY66929 | Canola | nucleus, plastid | 21.56 | 26.55 |
CDY51449 | Canola | nucleus | 31.65 | 20.78 |
CDY32423 | Canola | nucleus | 30.73 | 20.3 |
CDY62045 | Canola | nucleus | 31.19 | 20.3 |
CDY48884 | Canola | nucleus | 29.82 | 19.4 |
CDX90106 | Canola | nucleus | 18.81 | 19.25 |
CDY15706 | Canola | nucleus | 18.35 | 18.87 |
CDY27630 | Canola | nucleus | 20.18 | 18.18 |
CDX84906 | Canola | nucleus | 20.18 | 18.03 |
CDY03948 | Canola | cytosol | 11.93 | 17.93 |
CDY11768 | Canola | nucleus | 19.72 | 16.8 |
CDY11802 | Canola | nucleus | 17.43 | 16.52 |
CDY55674 | Canola | nucleus | 20.18 | 15.17 |
CDX68049 | Canola | nucleus | 19.72 | 14.83 |
CDY11694 | Canola | nucleus | 19.72 | 14.83 |
CDX96145 | Canola | nucleus | 19.72 | 14.83 |
CDY61813 | Canola | nucleus | 20.18 | 14.43 |
CDY58387 | Canola | nucleus | 20.18 | 14.33 |
CDY28328 | Canola | nucleus | 22.48 | 13.76 |
CDY49379 | Canola | nucleus | 20.64 | 12.86 |
CDX72435 | Canola | nucleus | 20.64 | 12.86 |
CDX75386 | Canola | nucleus | 20.18 | 12.68 |
CDX69011 | Canola | nucleus | 20.18 | 12.68 |
CDY48431 | Canola | nucleus | 17.43 | 11.84 |
CDY37221 | Canola | nucleus | 18.35 | 11.56 |
CDX81461 | Canola | nucleus | 18.35 | 11.56 |
CDY03946 | Canola | nucleus | 6.88 | 5.45 |
Protein Annotations
MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078FII6 | UniProt:A0A078FII6 | EnsemblPlants:CDY12799 | ProteinID:CDY12799 |
ProteinID:CDY12799.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
EnsemblPlantsGene:GSBRNA2T00070424001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EAB7C0 | InterPro:bHLH_dom |
SEG:seg | : | : | : | : | : |
Description
BnaC07g16340DBnaC07g16340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FII6]
Coordinates
chrLK032027:+:216525..217249
Molecular Weight (calculated)
24168.2 Da
IEP (calculated)
9.856
GRAVY (calculated)
-0.528
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDIMNMMM QQIEKLPEFC NTNPSLIDHN NNTNPFLLNS NHNHSDSMTP EPGLLTNPSS LSPNTIYSSV LHEKRSTSSN TNSTNMEAMR EMIYRIAVMQ
101: PIHIDPQAVK PPKRRNVRIS KDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK QVQTLEQQAV DTSGGGMTAA VSGGGGVIMK
201: GCGAMGTHQM VGNAQILR
101: PIHIDPQAVK PPKRRNVRIS KDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK QVQTLEQQAV DTSGGGMTAA VSGGGGVIMK
201: GCGAMGTHQM VGNAQILR
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.