CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04603
KRH28464
KRH57944
KRH77007

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50330.1	KRH04603	AT3G50330.1	21798944
AT3G50330.1	KRH28464	AT3G50330.1	21798944
AT3G50330.1	KRH57944	AT3G50330.1	21798944
AT3G50330.1	KRH77007	AT3G50330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77007	Soybean	nucleus	89.26	86.06
Solyc12g088790.1.1	Tomato	nucleus	34.3	68.59
PGSC0003DMT400048857	Potato	nucleus	36.78	60.14
KRH57944	Soybean	nucleus	61.16	58.27
KRH04603	Soybean	nucleus	65.7	56.38
Bra037128.1-P	Field mustard	cytoskeleton, cytosol, nucleus	45.87	54.15
CDY18636	Canola	nucleus	45.45	53.66
Bra036071.1-P	Field mustard	nucleus	47.11	53.52
CDY30593	Canola	nucleus	46.69	53.05
CDY12799	Canola	nucleus	47.52	52.75
CDX81342	Canola	cytoskeleton, cytosol, nucleus	45.04	52.66
CDX83121	Canola	nucleus	49.17	51.74
Bra030002.1-P	Field mustard	nucleus	49.17	51.74
CDY01443	Canola	nucleus	46.69	51.6
Bra012128.1-P	Field mustard	nucleus	46.69	51.6
CDX68583	Canola	nucleus	48.35	51.54
AT3G50330.1	Thale cress	nucleus	49.17	51.52
CDY17765	Canola	nucleus	47.93	51.33
Bra036801.1-P	Field mustard	nucleus	48.35	50.65
CDY63952	Canola	nucleus	48.35	50.65
CDY43559	Canola	nucleus	48.35	50.65
AT5G67060.1	Thale cress	nucleus	47.93	48.13
PGSC0003DMT400010344	Potato	nucleus	44.21	47.77
KRH52010	Soybean	nucleus	50.0	46.9
KRH61303	Soybean	nucleus	48.76	44.7
TraesCS7B01G160500.1	Wheat	nucleus	38.43	42.08
Os09t0455300-01	Rice	nucleus	40.5	41.53
HORVU7Hr1G054880.1	Barley	nucleus	38.02	41.44
TraesCS7A01G262600.1	Wheat	nucleus	37.6	41.36
TraesCS7D01G263400.1	Wheat	nucleus	37.6	41.36
Zm00001d050016_P001	Maize	nucleus	40.91	41.08
KRH52087	Soybean	cytosol, mitochondrion, nucleus	15.7	40.86
TraesCS5D01G244000.1	Wheat	nucleus	38.84	40.0
TraesCS5A01G237500.1	Wheat	nucleus	38.84	40.0
HORVU5Hr1G068110.1	Barley	nucleus	39.26	39.92
TraesCS6A01G142000.1	Wheat	nucleus	38.43	39.57
TraesCS5B01G235200.1	Wheat	nucleus	38.43	39.57
Zm00001d020705_P001	Maize	nucleus	38.43	38.43
KRH53884	Soybean	nucleus	35.95	37.18
GSMUA_Achr9P15380_001	Banana	nucleus	37.6	37.14
Zm00001d031781_P001	Maize	nucleus	38.43	37.05
EES15124	Sorghum	nucleus	40.5	36.43
EER96848	Sorghum	nucleus	38.84	36.02
KRH64060	Soybean	nucleus	35.12	34.98
Zm00001d005841_P001	Maize	nucleus	34.3	34.3
KRH59559	Soybean	nucleus	33.47	30.45
KRH43543	Soybean	nucleus	33.47	29.89
KRH65648	Soybean	nucleus, plastid	20.66	27.47
KRH75991	Soybean	nucleus, plastid	19.83	26.97
KRH00301	Soybean	nucleus, plastid	19.42	26.7
KRH49427	Soybean	nucleus, plastid	19.42	26.7
KRH47179	Soybean	nucleus	32.64	18.33
KRH44227	Soybean	nucleus	31.41	17.16
KRH09982	Soybean	nucleus	31.41	17.08
KRH23349	Soybean	nucleus	30.99	16.67
KRG91108	Soybean	nucleus	23.55	16.15
KRH15121	Soybean	nucleus	19.01	15.7
KRG91107	Soybean	nucleus	23.14	15.64
KRH73015	Soybean	nucleus	19.01	15.59
KRH35669	Soybean	nucleus	22.73	15.36
KRH35668	Soybean	nucleus	22.31	15.34
KRH30960	Soybean	nucleus	19.42	13.86
KRG97923	Soybean	nucleus	19.01	13.57
KRH61404	Soybean	nucleus	18.59	13.55
KRH05600	Soybean	nucleus	18.59	12.75
KRH15444	Soybean	nucleus	17.36	12.0

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02006753	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G055300	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1LHE1	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlants:KRH28464	ProteinID:KRH28464	ProteinID:KRH28464.1	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF74	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000233D87F	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:4170345..4171530

Molecular Weight (calculated)

27214.9 Da

IEP (calculated)

9.656

GRAVY (calculated)

-0.464

Length

242 amino acids

Sequence
(BLAST)

001: MDVDILKTST SDNISMDMMM TMMQMEKFPE FCEPFYNNNN NTSTAPLYPE NELLINSTTT LPVFSNVINN PNVITPPPSS SNFIQQQPMT PHLEPNLEKR
101: NSVAAMREMI FRVAVMQPIH IDPESIKPPK RRNVKISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ TLEQAGASRP
201: LNVVGFPTTA SNANNNNSYS GFVKSCQPYP MLGSAASKQL LS

Best Arabidopsis Sequence Match ( AT5G67060.1 )
(BLAST)

001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R

Arabidopsis Description

HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.