CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49427	Soybean	nucleus, plastid	92.61	92.61
KRH75991	Soybean	nucleus, plastid	55.11	54.49
KRH65648	Soybean	nucleus, plastid	56.25	54.4
Solyc09g005070.1.1	Tomato	nucleus	42.05	50.0
VIT_08s0058g00110.t01	Wine grape	plastid	45.45	49.69
KRH52087	Soybean	cytosol, mitochondrion, nucleus	21.59	40.86
AT5G01305.1	Thale cress	nucleus, plastid	37.5	38.6
GSMUA_Achr4P18820_001	Banana	nucleus	42.61	36.59
Bra028895.1-P	Field mustard	nucleus, plastid	35.8	35.59
CDY55900	Canola	nucleus, plastid	35.8	35.59
CDY66929	Canola	nucleus, plastid	35.8	35.59
Zm00001d042989_P001	Maize	nucleus, plastid	39.77	33.18
Zm00001d042988_P001	Maize	nucleus, plastid	39.77	33.18
Os01t0831000-01	Rice	nucleus	40.34	33.02
TraesCS3D01G344600.1	Wheat	nucleus	38.07	31.46
HORVU3Hr1G087710.1	Barley	nucleus	37.5	31.43
TraesCS3A01G350600.1	Wheat	nucleus	37.5	31.13
TraesCS3B01G383000.1	Wheat	nucleus	36.93	30.66
OQU87789	Sorghum	cytosol	19.89	24.48
KRH53884	Soybean	nucleus	26.7	20.09
KRH64060	Soybean	nucleus	27.27	19.75
KRH28464	Soybean	nucleus	26.7	19.42
KRH52010	Soybean	nucleus	27.84	18.99
KRH57944	Soybean	nucleus	27.27	18.9
KRH59559	Soybean	nucleus	28.41	18.8
KRH77007	Soybean	nucleus	26.7	18.73
KRH43543	Soybean	nucleus	28.41	18.45
KRH61303	Soybean	nucleus	27.27	18.18
KRH04603	Soybean	nucleus	26.7	16.67
KRH15121	Soybean	nucleus	23.86	14.33
KRH73015	Soybean	nucleus	23.86	14.24
KRG97923	Soybean	nucleus	23.86	12.39
KRH30960	Soybean	nucleus	23.3	12.09
KRH61404	Soybean	nucleus	22.16	11.75
KRH35668	Soybean	nucleus	23.3	11.65
KRG91108	Soybean	nucleus	23.3	11.61
KRG91107	Soybean	nucleus	23.3	11.45
KRH35669	Soybean	nucleus	23.3	11.45
KRH05600	Soybean	nucleus	22.73	11.33
KRH15444	Soybean	nucleus	22.16	11.14
KRH09982	Soybean	nucleus	27.27	10.79
KRH23349	Soybean	nucleus	26.7	10.44
KRH47179	Soybean	nucleus	24.43	9.98
KRH44227	Soybean	nucleus	23.86	9.48

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02011435	EnsemblPlantsGene:GLYMA_18G204700	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1KG08	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlants:KRH00301	ProteinID:KRH00301	ProteinID:KRH00301.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF167	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00023DC85F	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr18:-:48794503..48795033

Molecular Weight (calculated)

19518.9 Da

IEP (calculated)

7.345

GRAVY (calculated)

-0.658

Length

176 amino acids

Sequence
(BLAST)

001: MECISNPTPC EGSSSSSKHS NKSNKEKKGV RKSNKGGGGG GVRLSTDPQS VAARERRHRI SDRFKILQSM VPGGSKMDTV SMLEGAIHYV KFLKTQILLH
101: QALIDFVDVD HHESPLFLPS EYNNFPDEHS ISLQQNPSSS VSVHSHHNQQ SLPQLPLAQC YFQGEEDFNT FDAMPL

Best Arabidopsis Sequence Match ( AT5G01305.1 )
(BLAST)

001: MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S

Arabidopsis Description

Transcription factor bHLH140-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BD33]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.