Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G344600.1 | Wheat | nucleus | 97.17 | 96.71 |
| TraesCS3B01G383000.1 | Wheat | nucleus | 94.81 | 94.81 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 91.98 | 92.86 |
| Os01t0831000-01 | Rice | nucleus | 59.91 | 59.07 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 58.49 | 58.77 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 58.49 | 58.77 |
| OQU87789 | Sorghum | cytosol | 33.96 | 50.35 |
| Solyc09g005070.1.1 | Tomato | nucleus | 27.36 | 39.19 |
| VIT_08s0058g00110.t01 | Wine grape | plastid | 29.25 | 38.51 |
| KRH00301 | Soybean | nucleus, plastid | 31.13 | 37.5 |
| KRH49427 | Soybean | nucleus, plastid | 30.19 | 36.36 |
| GSMUA_Achr4P18820_001 | Banana | nucleus | 33.49 | 34.63 |
| KRH75991 | Soybean | nucleus, plastid | 28.77 | 34.27 |
| KRH65648 | Soybean | nucleus, plastid | 29.25 | 34.07 |
| CDY66929 | Canola | nucleus, plastid | 26.89 | 32.2 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 25.94 | 32.16 |
| Bra028895.1-P | Field mustard | nucleus, plastid | 26.42 | 31.64 |
| CDY55900 | Canola | nucleus, plastid | 26.42 | 31.64 |
| TraesCS7A01G169700.1 | Wheat | cytosol | 22.17 | 26.26 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 25.47 | 24.55 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 24.53 | 22.13 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 24.06 | 21.7 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 14.62 | 16.67 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 24.53 | 16.61 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 19.34 | 14.96 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 18.87 | 13.84 |
| TraesCS5A01G067600.1 | Wheat | nucleus | 17.92 | 13.1 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 17.92 | 13.06 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 15.57 | 12.99 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 17.45 | 12.98 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 17.45 | 12.8 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 22.17 | 12.18 |
| TraesCS2A01G194200.1 | Wheat | nucleus | 16.98 | 11.92 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 21.23 | 11.39 |
| TraesCS4A01G234500.1 | Wheat | nucleus | 16.04 | 10.9 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 23.58 | 10.71 |
| TraesCS4A01G047700.1 | Wheat | nucleus | 16.51 | 10.64 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0045893 | GO:GO:0046983 | GO:GO:2000032 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF167 | SMART:SM00353 | SUPFAM:SSF47459 |
| EnsemblPlantsGene:TraesCS3A01G350600 | EnsemblPlants:TraesCS3A01G350600.1 | InterPro:bHLH_dom | TIGR:cd00083 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:+:599325960..599326730
Molecular Weight (calculated)
22940.1 Da
IEP (calculated)
6.557
GRAVY (calculated)
-0.290
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPYHYENIH DPHGCSFPIH PQPPLLLHHY PAAALAESRV SRGGAGRRRP GAKLSTDPQS VAARERRHRI SDRFRVLRSL VPGGSKMDTV SMLEQAIHYV
101: KFLKAQVSLH QAALIQHEEG CGGVVHGEFA GAAGEVTAME LPAAQALQEV MSRYYAAAHQ VEELDLCAGQ MSSSSHDLPP LPSCILDEES AAACYSGCSL
201: QAEEIAHAHG SY
101: KFLKAQVSLH QAALIQHEEG CGGVVHGEFA GAAGEVTAME LPAAQALQEV MSRYYAAAHQ VEELDLCAGQ MSSSSHDLPP LPSCILDEES AAACYSGCSL
201: QAEEIAHAHG SY
001: MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S
Arabidopsis Description
Transcription factor bHLH140-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BD33]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.