Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G208500.2 | Wheat | mitochondrion | 94.43 | 93.04 |
| TraesCS3B01G233700.2 | Wheat | extracellular, mitochondrion, nucleus, plastid | 93.15 | 92.75 |
| HORVU3Hr1G048770.1 | Barley | plastid | 87.37 | 84.65 |
| Zm00001d011187_P001 | Maize | nucleus | 56.53 | 61.4 |
| Os01t0566800-00 | Rice | nucleus | 60.39 | 60.52 |
| OQU87026 | Sorghum | nucleus | 53.32 | 54.01 |
| Zm00001d044242_P001 | Maize | nucleus | 53.96 | 52.39 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 17.99 | 50.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.48 | 38.46 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 16.27 | 32.34 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 14.99 | 31.82 |
| Bra001826.1-P | Field mustard | nucleus | 21.63 | 31.17 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 15.63 | 31.06 |
| CDY32423 | Canola | nucleus | 21.84 | 30.91 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 25.27 | 30.57 |
| Bra031275.1-P | Field mustard | nucleus | 21.63 | 30.42 |
| CDY51449 | Canola | nucleus | 21.63 | 30.42 |
| PGSC0003DMT400006453 | Potato | nucleus | 25.05 | 30.31 |
| Solyc03g121240.1.1 | Tomato | nucleus | 24.63 | 30.26 |
| CDY62045 | Canola | nucleus | 21.41 | 29.85 |
| CDY48884 | Canola | nucleus | 21.2 | 29.55 |
| AT3G21330.1 | Thale cress | nucleus | 22.48 | 28.15 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 23.77 | 28.1 |
| TraesCS7A01G169700.1 | Wheat | cytosol | 10.71 | 27.93 |
| KRH09982 | Soybean | nucleus | 23.77 | 24.94 |
| KRH23349 | Soybean | nucleus | 23.98 | 24.89 |
| KRH47179 | Soybean | nucleus | 22.91 | 24.83 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 24.63 | 24.42 |
| KRH44227 | Soybean | nucleus | 22.7 | 23.93 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 10.71 | 23.58 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 14.99 | 22.36 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 7.71 | 19.35 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 9.85 | 18.11 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 9.85 | 16.79 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 9.85 | 16.14 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 9.64 | 15.57 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 9.21 | 14.78 |
| TraesCS5A01G067600.1 | Wheat | nucleus | 8.99 | 14.48 |
| TraesCS4A01G047700.1 | Wheat | nucleus | 10.06 | 14.29 |
| TraesCS2A01G194200.1 | Wheat | nucleus | 9.21 | 14.24 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 8.57 | 13.84 |
| TraesCS4A01G234500.1 | Wheat | nucleus | 8.78 | 13.14 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G207300.2 | EnsemblPlantsGene:TraesCS3A01G207300 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF303 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr3A:+:365250752..365252300
Molecular Weight (calculated)
48432.4 Da
IEP (calculated)
6.173
GRAVY (calculated)
-0.241
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPLLQRASL PSPPPPAAAT AAECSPLPQL TCVPLIKVGG KMDPGFCNDM ILSESAWNSG GGDGGAAGDV VNVVDGSGMT VLERLVLDEA LAAAIMELQG
101: IQVPCAGGKP MAGGLEAASL AFGATGTAPV TPAYAEVDGV VLQRQQHQHR HQGVMGMPVD YDLVPAARAV TLATVPAAPS FPKGAAAGVV DAAAFDSGNN
201: ALTSAVTAGT TRQCDEANGG AKRQLRSSRK RRAADAPCPA ADGHPQSQEN PLCSLLAYTN TGDGGIQIAF SGGGGAAPSS KRTKPSLSST SSSISFDGRS
301: SVNNGCDDVP RYEPDTEALA QVKEMIYRAA AMRPVSLGVE EEDTGERPSR RNVRISSDPQ TVAARQRRER ISERLRVLQK LVPGGAKMDT ASMLDEAANY
401: LRFLKSQLRE LQTLDRRNYG ANAISNTGMA PLMSYNNMPA FAFPATGAGE TLGGGGGEEA FMSSRFR
101: IQVPCAGGKP MAGGLEAASL AFGATGTAPV TPAYAEVDGV VLQRQQHQHR HQGVMGMPVD YDLVPAARAV TLATVPAAPS FPKGAAAGVV DAAAFDSGNN
201: ALTSAVTAGT TRQCDEANGG AKRQLRSSRK RRAADAPCPA ADGHPQSQEN PLCSLLAYTN TGDGGIQIAF SGGGGAAPSS KRTKPSLSST SSSISFDGRS
301: SVNNGCDDVP RYEPDTEALA QVKEMIYRAA AMRPVSLGVE EEDTGERPSR RNVRISSDPQ TVAARQRRER ISERLRVLQK LVPGGAKMDT ASMLDEAANY
401: LRFLKSQLRE LQTLDRRNYG ANAISNTGMA PLMSYNNMPA FAFPATGAGE TLGGGGGEEA FMSSRFR
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.