Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G406100.1 | Wheat | nucleus | 83.05 | 87.27 |
| TraesCS5D01G411600.1 | Wheat | nucleus | 89.27 | 86.0 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 16.61 | 80.0 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 74.74 | 73.97 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 23.53 | 46.58 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 27.34 | 42.47 |
| EER93400 | Sorghum | nucleus | 37.72 | 37.33 |
| CDY15706 | Canola | nucleus | 27.34 | 37.26 |
| CDX90106 | Canola | nucleus | 27.34 | 37.09 |
| CDY03948 | Canola | cytosol | 17.65 | 35.17 |
| CDY27630 | Canola | nucleus | 28.37 | 33.88 |
| Bra032846.1-P | Field mustard | nucleus | 28.37 | 33.61 |
| TraesCS5A01G067600.1 | Wheat | nucleus | 33.56 | 33.45 |
| Bra030063.1-P | Field mustard | nucleus | 29.41 | 33.33 |
| CDY11768 | Canola | nucleus | 29.41 | 33.2 |
| CDX84906 | Canola | nucleus | 28.03 | 33.2 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 29.07 | 33.07 |
| Bra010921.1-P | Field mustard | nucleus | 29.07 | 32.81 |
| AT1G27740.1 | Thale cress | nucleus | 28.72 | 32.17 |
| AT5G43175.1 | Thale cress | nucleus | 24.22 | 31.39 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 29.76 | 31.16 |
| CDY11802 | Canola | nucleus | 24.57 | 30.87 |
| TraesCS2A01G194200.1 | Wheat | nucleus | 31.14 | 29.8 |
| TraesCS4A01G047700.1 | Wheat | nucleus | 33.91 | 29.79 |
| TraesCS4A01G234500.1 | Wheat | nucleus | 31.83 | 29.49 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 22.15 | 21.99 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 20.07 | 21.17 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 21.11 | 21.11 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 19.38 | 19.65 |
| TraesCS7A01G169700.1 | Wheat | cytosol | 11.42 | 18.44 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 13.84 | 18.18 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 12.8 | 17.45 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 14.19 | 17.45 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 14.19 | 17.45 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 15.22 | 14.06 |
| CDY03946 | Canola | nucleus | 11.42 | 12.0 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 15.22 | 11.4 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 15.57 | 11.39 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 13.84 | 8.57 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G401300.1 | EnsemblPlantsGene:TraesCS5A01G401300 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF105 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:594132650..594133932
Molecular Weight (calculated)
31351.0 Da
IEP (calculated)
9.474
GRAVY (calculated)
-0.670
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MLREQAAAVR SQEAARWSPC HAPDEEESEI VARFLTAPYP CFDGGYDFLG EPDVSLGINT LSYCGSIDLN LSRKEERAGK RGGNGNMVPG PSPPAGRGRV
101: RAGAGYLLSD RDSNGDGAAA TPKRKVFQAG HAHDQGGDLG RHKKKARAAD HKGEKSVTFK TKMPQQKRRS SSYCSDNESN CSQGDGGEEA NVAGGGTVKV
201: RAGRGSAADP QSLYAKRRRE KINDRLRVLQ KLVPNGTKVD LSTMLEEAVL YVKFLQLQIK VLSSDEMWMY APLAYSGMSF GIDLRITPQ
101: RAGAGYLLSD RDSNGDGAAA TPKRKVFQAG HAHDQGGDLG RHKKKARAAD HKGEKSVTFK TKMPQQKRRS SSYCSDNESN CSQGDGGEEA NVAGGGTVKV
201: RAGRGSAADP QSLYAKRRRE KINDRLRVLQ KLVPNGTKVD LSTMLEEAVL YVKFLQLQIK VLSSDEMWMY APLAYSGMSF GIDLRITPQ
001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR
Arabidopsis Description
BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.