Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G170900.1 | Wheat | nucleus | 90.5 | 87.57 |
| HORVU0Hr1G019640.1 | Barley | cytosol | 89.94 | 86.56 |
| TraesCS7B01G074900.1 | Wheat | nucleus | 88.83 | 86.41 |
| GSMUA_Achr8P23350_001 | Banana | nucleus | 33.52 | 38.71 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 36.31 | 29.55 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 36.31 | 27.66 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 36.31 | 27.66 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 26.26 | 22.17 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 31.84 | 18.21 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 16.76 | 16.13 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 32.96 | 15.29 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 32.96 | 14.94 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 19.55 | 13.78 |
| TraesCS5A01G067600.1 | Wheat | nucleus | 18.99 | 11.72 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 18.44 | 11.42 |
| TraesCS2A01G194200.1 | Wheat | nucleus | 18.99 | 11.26 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 17.88 | 11.07 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 16.76 | 10.95 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 27.93 | 10.71 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 17.32 | 10.65 |
| TraesCS4A01G234500.1 | Wheat | nucleus | 18.44 | 10.58 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 16.2 | 10.18 |
| TraesCS4A01G047700.1 | Wheat | nucleus | 16.76 | 9.12 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G169700.1 | EnsemblPlantsGene:TraesCS7A01G169700 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF303 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:126122062..126123032
Molecular Weight (calculated)
19605.4 Da
IEP (calculated)
9.807
GRAVY (calculated)
-0.407
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMTNQEQLM HTISQLDSAL TYLASPSTSP SQQPPVLAPP YPSCATGAVT PNSVTMPVLV PPPAAAYPEH TATRRLVVGV HPAADVERPR RRNGRVSSEP
101: QSVAARLRRE RVSQRMRALQ RLVPGGARLD TASMLEEAVR YVRFLKSHVQ ALEQAAAALH GRREDVAGGE FYHHCPHYA
101: QSVAARLRRE RVSQRMRALQ RLVPGGARLD TASMLEEAVR YVRFLKSHVQ ALEQAAAALH GRREDVAGGE FYHHCPHYA
001: MENGMYKKKG VCDSCVSSKS RSNHSPKRSM MEPQPHHLLM DWNKANDLLT QEHAAFLNDP HHLMLDPPPE TLIHLDEDEE YDEDMDAMKE MQYMIAVMQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
Arabidopsis Description
INDTranscription factor IND [Source:UniProtKB/Swiss-Prot;Acc:O81313]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.