Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G235200.1 | Wheat | nucleus | 98.72 | 98.72 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 94.47 | 94.47 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 93.62 | 93.62 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 91.49 | 90.34 |
| Os09t0455300-01 | Rice | nucleus | 71.49 | 71.19 |
| EER96848 | Sorghum | nucleus | 71.49 | 64.37 |
| Solyc12g088790.1.1 | Tomato | nucleus | 30.64 | 59.5 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 54.89 | 58.64 |
| Zm00001d005841_P001 | Maize | nucleus | 58.3 | 56.61 |
| PGSC0003DMT400048857 | Potato | nucleus | 33.62 | 53.38 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 51.91 | 49.8 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 39.15 | 44.88 |
| CDY18636 | Canola | nucleus | 38.72 | 44.39 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 38.72 | 43.96 |
| Bra036071.1-P | Field mustard | nucleus | 37.87 | 41.78 |
| Bra012128.1-P | Field mustard | nucleus | 38.72 | 41.55 |
| CDY30593 | Canola | nucleus | 37.45 | 41.31 |
| CDY12799 | Canola | nucleus | 38.3 | 41.28 |
| CDY01443 | Canola | nucleus | 38.3 | 41.1 |
| CDY43559 | Canola | nucleus | 39.57 | 40.26 |
| CDY63952 | Canola | nucleus | 39.57 | 40.26 |
| Bra036801.1-P | Field mustard | nucleus | 39.57 | 40.26 |
| AT5G67060.1 | Thale cress | nucleus | 40.43 | 39.42 |
| AT3G50330.1 | Thale cress | nucleus | 38.72 | 39.39 |
| CDX68583 | Canola | nucleus | 37.87 | 39.21 |
| Bra030002.1-P | Field mustard | nucleus | 37.87 | 38.7 |
| CDX83121 | Canola | nucleus | 37.87 | 38.7 |
| CDY17765 | Canola | nucleus | 37.02 | 38.5 |
| KRH28464 | Soybean | nucleus | 39.57 | 38.43 |
| PGSC0003DMT400010344 | Potato | nucleus | 35.74 | 37.5 |
| KRH77007 | Soybean | nucleus | 40.0 | 37.45 |
| TraesCS7A01G169700.1 | Wheat | cytosol | 27.66 | 36.31 |
| KRH57944 | Soybean | nucleus | 35.74 | 33.07 |
| KRH04603 | Soybean | nucleus | 38.3 | 31.91 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 33.19 | 24.92 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 21.7 | 24.06 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 31.06 | 18.91 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 14.47 | 18.28 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 28.94 | 17.22 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 32.34 | 16.27 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 18.3 | 15.69 |
| TraesCS5A01G067600.1 | Wheat | nucleus | 18.72 | 15.17 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 16.17 | 14.96 |
| TraesCS4A01G234500.1 | Wheat | nucleus | 19.15 | 14.42 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 17.45 | 14.39 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 17.45 | 14.19 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 17.45 | 14.19 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 17.02 | 13.75 |
| TraesCS2A01G194200.1 | Wheat | nucleus | 17.45 | 13.58 |
| TraesCS4A01G047700.1 | Wheat | nucleus | 17.87 | 12.77 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G142000.1 | EnsemblPlantsGene:TraesCS6A01G142000 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:116812872..116813579
Molecular Weight (calculated)
25213.9 Da
IEP (calculated)
6.394
GRAVY (calculated)
-0.250
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDLLMSSS PEAQLALMNT MLQLEQALND QSMMMGETSP PTSPVQTPSQ SLSPPPHVST TCATADASYF YHQDLQTQAA AAGYAGTGGV HQEYVVSPGA
101: AVFDGAGGTP QGYSSPSSSD AMREMIFHIA ALQPVEVDLE AVRPPKRRNV RTSKDPQSVA ARLRRERISE RIRVLQRLVP GGTKMDTASM LDEAIHYVKF
201: LKSQVQSLEL AAAATGAAAH RAAAFAYPAL QHAPW
101: AVFDGAGGTP QGYSSPSSSD AMREMIFHIA ALQPVEVDLE AVRPPKRRNV RTSKDPQSVA ARLRRERISE RIRVLQRLVP GGTKMDTASM LDEAIHYVKF
201: LKSQVQSLEL AAAATGAAAH RAAAFAYPAL QHAPW
001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
Arabidopsis Description
HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.