CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68583
CDX69281
CDX75629
CDX83121
CDY17765
CDY22448
CDY30593
CDY44048

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50330.1	CDX68583	AT3G50330.1	21798944
AT3G50330.1	CDX83121	AT3G50330.1	21798944
AT3G50330.1	CDY17765	AT3G50330.1	21798944
AT3G50330.1	CDY30593	AT3G50330.1	21798944
AT3G50330.1	CDX69281	AT4G36930.1	17855426
AT3G50330.1	CDX75629	AT4G36930.1	17855426
AT3G50330.1	CDY22448	AT4G36930.1	17855426
AT3G50330.1	CDY44048	AT4G36930.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036071.1-P	Field mustard	nucleus	99.06	99.06
CDY17765	Canola	nucleus	92.49	87.17
CDX68583	Canola	nucleus	85.92	80.62
CDX83121	Canola	nucleus	86.85	80.43
AT3G50330.1	Thale cress	nucleus	81.69	75.32
Solyc12g088790.1.1	Tomato	nucleus	38.5	67.77
CDY18636	Canola	nucleus	63.85	66.34
CDX81342	Canola	cytoskeleton, cytosol, nucleus	63.38	65.22
CDY43559	Canola	nucleus	68.08	62.77
CDY63952	Canola	nucleus	67.61	62.34
CDY12799	Canola	nucleus	62.44	61.01
CDY01443	Canola	nucleus	62.44	60.73
PGSC0003DMT400048857	Potato	nucleus	38.97	56.08
KRH28464	Soybean	nucleus	53.05	46.69
KRH77007	Soybean	nucleus	52.11	44.22
PGSC0003DMT400010344	Potato	nucleus	46.48	44.2
TraesCS7A01G262600.1	Wheat	nucleus	44.6	43.18
TraesCS7D01G263400.1	Wheat	nucleus	44.6	43.18
HORVU7Hr1G054880.1	Barley	nucleus	44.6	42.79
TraesCS7B01G160500.1	Wheat	nucleus	43.66	42.08
KRH57944	Soybean	nucleus	49.77	41.73
KRH04603	Soybean	nucleus	53.52	40.43
CDX91916	Canola	cytosol	32.86	39.33
Os09t0455300-01	Rice	nucleus	43.19	38.98
Zm00001d050016_P001	Maize	nucleus	43.19	38.17
GSMUA_Achr9P15380_001	Banana	nucleus	43.66	37.96
TraesCS5D01G244000.1	Wheat	nucleus	41.78	37.87
TraesCS5A01G237500.1	Wheat	nucleus	41.78	37.87
HORVU5Hr1G068110.1	Barley	nucleus	42.25	37.82
TraesCS6A01G142000.1	Wheat	nucleus	41.31	37.45
TraesCS5B01G235200.1	Wheat	nucleus	41.31	37.45
CDX74329	Canola	cytosol	31.92	37.36
Zm00001d020705_P001	Maize	nucleus	41.31	36.36
Zm00001d031781_P001	Maize	nucleus	42.25	35.86
CDX85799	Canola	nucleus	35.21	35.05
EES15124	Sorghum	nucleus	44.13	34.94
CDY64847	Canola	nucleus	35.21	34.88
EER96848	Sorghum	nucleus	42.25	34.48
Zm00001d005841_P001	Maize	nucleus	38.97	34.3
CDY21597	Canola	nucleus	33.8	32.29
CDY66929	Canola	nucleus, plastid	21.6	25.99
CDY55900	Canola	nucleus, plastid	21.6	25.99
CDY51449	Canola	nucleus	34.27	21.99
CDY32423	Canola	nucleus	33.8	21.82
CDY62045	Canola	nucleus	33.8	21.49
CDY48884	Canola	nucleus	33.8	21.49
CDX90106	Canola	nucleus	20.19	20.19
CDY15706	Canola	nucleus	19.72	19.81
CDY27630	Canola	nucleus	20.66	18.18
CDX84906	Canola	nucleus	20.66	18.03
CDY03948	Canola	cytosol	12.21	17.93
CDY11768	Canola	nucleus	21.13	17.58
CDY11802	Canola	nucleus	18.78	17.39
CDY55674	Canola	nucleus	20.66	15.17
CDX96145	Canola	nucleus	20.19	14.83
CDY11694	Canola	nucleus	20.19	14.83
CDX68049	Canola	nucleus	20.19	14.83
CDY61813	Canola	nucleus	20.19	14.1
CDY58387	Canola	nucleus	20.19	14.01
CDX69011	Canola	nucleus	20.66	12.68
CDY28328	Canola	nucleus	21.13	12.64
CDY49379	Canola	nucleus	20.66	12.57
CDX72435	Canola	nucleus	20.66	12.57
CDX75386	Canola	nucleus	20.19	12.39
CDX81461	Canola	nucleus	18.31	11.27
CDY37221	Canola	nucleus	18.31	11.27
CDY48431	Canola	nucleus	16.43	10.9
CDY03946	Canola	nucleus	7.98	6.18

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078H1E6	UniProt:A0A078H1E6	EnsemblPlants:CDY30593	ProteinID:CDY30593
ProteinID:CDY30593.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00045872001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF74	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EEBE6A	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaAnng03680DBnaAnng03680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1E6]

Coordinates

chrLK032256:+:66463..67104

Molecular Weight (calculated)

23917.9 Da

IEP (calculated)

10.219

GRAVY (calculated)

-0.610

Length

213 amino acids

Sequence
(BLAST)

001: MDNSDILMNM MLTQMEKLPD HFSNPNLNPS SHNITMPSES NTYHPFFFNH NNHTHPPVLN PTITHHHQPG LNFRYAPSTS SFLPDKRGGG GDNADMAAMR
101: EMIFRIAVMQ PIHIDPKSVK PPKRKNVRIS KDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK QVQSLEEHAV VNGGGMTPAP
201: PVVGGKGCKD YAI

Best Arabidopsis Sequence Match ( AT3G50330.1 )
(BLAST)

001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R

Arabidopsis Description

HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.