Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49379 | Canola | nucleus | 96.86 | 96.86 |
| CDX69011 | Canola | nucleus | 86.86 | 87.61 |
| CDX75386 | Canola | nucleus | 85.14 | 85.88 |
| Bra034587.1-P | Field mustard | nucleus | 82.86 | 83.81 |
| CDY28328 | Canola | nucleus | 82.86 | 81.46 |
| CDY48431 | Canola | nucleus | 70.86 | 77.26 |
| CDX81461 | Canola | nucleus | 59.43 | 60.12 |
| CDY37221 | Canola | nucleus | 58.29 | 58.96 |
| PGSC0003DMT400008370 | Potato | nucleus | 28.29 | 50.0 |
| Solyc10g049720.1.1 | Tomato | nucleus | 37.71 | 44.3 |
| PGSC0003DMT400089728 | Potato | nucleus | 38.29 | 43.93 |
| Solyc10g049780.1.1 | Tomato | nucleus | 33.71 | 43.38 |
| CDX90106 | Canola | nucleus | 26.29 | 43.19 |
| CDY15706 | Canola | nucleus | 25.71 | 42.45 |
| VIT_03s0091g00730.t01 | Wine grape | nucleus | 41.14 | 41.14 |
| PGSC0003DMT400087143 | Potato | nucleus | 38.57 | 40.54 |
| Solyc01g107140.1.1 | Tomato | nucleus | 37.43 | 39.7 |
| CDY03948 | Canola | cytosol | 16.29 | 39.31 |
| CDX84906 | Canola | nucleus | 26.86 | 38.52 |
| CDY27630 | Canola | nucleus | 26.57 | 38.43 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 34.0 | 37.66 |
| CDY11768 | Canola | nucleus | 27.43 | 37.5 |
| KRG91108 | Soybean | nucleus | 37.71 | 37.39 |
| KRH35668 | Soybean | nucleus | 36.86 | 36.65 |
| KRH35669 | Soybean | nucleus | 37.14 | 36.31 |
| KRG91107 | Soybean | nucleus | 36.57 | 35.75 |
| CDY11802 | Canola | nucleus | 23.14 | 35.22 |
| KRH15444 | Soybean | nucleus | 34.86 | 34.86 |
| KRH05600 | Soybean | nucleus | 34.29 | 33.99 |
| CDX74329 | Canola | cytosol | 11.43 | 21.98 |
| CDY18636 | Canola | nucleus | 12.86 | 21.95 |
| CDX91916 | Canola | cytosol | 11.14 | 21.91 |
| CDY55674 | Canola | nucleus | 17.71 | 21.38 |
| CDX68049 | Canola | nucleus | 17.71 | 21.38 |
| CDX96145 | Canola | nucleus | 17.71 | 21.38 |
| CDY11694 | Canola | nucleus | 17.71 | 21.38 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 12.57 | 21.26 |
| CDX85799 | Canola | nucleus | 12.86 | 21.03 |
| CDY01443 | Canola | nucleus | 13.14 | 21.0 |
| CDY64847 | Canola | nucleus | 12.86 | 20.93 |
| CDY55900 | Canola | nucleus, plastid | 10.57 | 20.9 |
| CDY66929 | Canola | nucleus, plastid | 10.57 | 20.9 |
| CDY30593 | Canola | nucleus | 12.57 | 20.66 |
| CDY12799 | Canola | nucleus | 12.86 | 20.64 |
| CDY21597 | Canola | nucleus | 12.86 | 20.18 |
| CDY61813 | Canola | nucleus | 17.43 | 20.0 |
| CDY63952 | Canola | nucleus | 13.14 | 19.91 |
| CDY43559 | Canola | nucleus | 13.14 | 19.91 |
| CDY58387 | Canola | nucleus | 17.43 | 19.87 |
| CDX68583 | Canola | nucleus | 12.86 | 19.82 |
| CDX83121 | Canola | nucleus | 12.57 | 19.13 |
| CDY17765 | Canola | nucleus | 12.29 | 19.03 |
| CDY51449 | Canola | nucleus | 15.14 | 15.96 |
| CDY32423 | Canola | nucleus | 14.86 | 15.76 |
| CDY62045 | Canola | nucleus | 14.86 | 15.52 |
| CDY48884 | Canola | nucleus | 14.86 | 15.52 |
| CDY03946 | Canola | nucleus | 10.0 | 12.73 |
Protein Annotations
| EnsemblPlants:CDX72435 | EnsemblPlantsGene:GSBRNA2T00099938001 | Gene3D:4.10.280.10 | GO:A0A078C6H1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF105 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX72435 | ProteinID:CDX72435.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EADB91 | MapMan:15.5.32 | : |
Description
BnaC07g44570D
Coordinates
chrLK031796:-:1222976..1224569
Molecular Weight (calculated)
38741.6 Da
IEP (calculated)
4.684
GRAVY (calculated)
-0.817
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAMGEWSSS LGGMYTYATE EADFMNQLLA SYDHPGTGSA SGTTGGDHHG LYWSLGSHHN HLTLMPEASS FCFSGESSSY SVGNSGYYAV VPPAVEENNN
101: VPMDFGLEDA TINTNSYLVG EETSECDVEK YSSGKTLFPL ETVVENHNEE ESILQSEISV TTTDQHQKSL TGSKKRSRAT SADKNKRTKV SKRGQKNIEM
201: RDDTNNGEED EGEKVKKRKS GTMMSRQNSS TTFCSEEESQ CPSQDDGEED EEDASKALNL NGKTRASRGA ATDPQSLYAR KRRERINERL RILQNLVPNG
301: TKVDISTMLE EAVHYVKFLQ LQIKLLSSDD LWMYAPIAFN GMDIGLNSPR
101: VPMDFGLEDA TINTNSYLVG EETSECDVEK YSSGKTLFPL ETVVENHNEE ESILQSEISV TTTDQHQKSL TGSKKRSRAT SADKNKRTKV SKRGQKNIEM
201: RDDTNNGEED EGEKVKKRKS GTMMSRQNSS TTFCSEEESQ CPSQDDGEED EEDASKALNL NGKTRASRGA ATDPQSLYAR KRRERINERL RILQNLVPNG
301: TKVDISTMLE EAVHYVKFLQ LQIKLLSSDD LWMYAPIAFN GMDIGLNSPR
001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR
Arabidopsis Description
BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.