Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37221 | Canola | nucleus | 97.11 | 97.11 |
| Bra039819.1-P | Field mustard | nucleus | 96.82 | 96.82 |
| AT2G14760.3 | Thale cress | nucleus | 74.57 | 75.66 |
| CDX69011 | Canola | nucleus | 59.83 | 59.65 |
| CDX72435 | Canola | nucleus | 60.12 | 59.43 |
| CDY49379 | Canola | nucleus | 59.54 | 58.86 |
| CDX75386 | Canola | nucleus | 58.67 | 58.5 |
| CDY28328 | Canola | nucleus | 58.67 | 57.02 |
| CDY48431 | Canola | nucleus | 48.55 | 52.34 |
| PGSC0003DMT400008370 | Potato | nucleus | 29.19 | 51.01 |
| CDY03948 | Canola | cytosol | 19.08 | 45.52 |
| Solyc10g049780.1.1 | Tomato | nucleus | 34.1 | 43.38 |
| CDX90106 | Canola | nucleus | 26.59 | 43.19 |
| CDY15706 | Canola | nucleus | 25.43 | 41.51 |
| Solyc10g049720.1.1 | Tomato | nucleus | 35.55 | 41.28 |
| PGSC0003DMT400089728 | Potato | nucleus | 36.13 | 40.98 |
| CDX84906 | Canola | nucleus | 27.75 | 39.34 |
| CDY27630 | Canola | nucleus | 27.46 | 39.26 |
| VIT_03s0091g00730.t01 | Wine grape | nucleus | 39.6 | 39.14 |
| CDY11768 | Canola | nucleus | 28.03 | 37.89 |
| PGSC0003DMT400087143 | Potato | nucleus | 36.42 | 37.84 |
| Solyc01g107140.1.1 | Tomato | nucleus | 35.55 | 37.27 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 32.95 | 36.08 |
| KRH35668 | Soybean | nucleus | 35.84 | 35.23 |
| KRH35669 | Soybean | nucleus | 36.13 | 34.92 |
| KRG91108 | Soybean | nucleus | 35.55 | 34.84 |
| CDY11802 | Canola | nucleus | 23.12 | 34.78 |
| KRH15444 | Soybean | nucleus | 34.68 | 34.29 |
| KRG91107 | Soybean | nucleus | 35.26 | 34.08 |
| KRH05600 | Soybean | nucleus | 33.53 | 32.86 |
| CDX68049 | Canola | nucleus | 18.21 | 21.72 |
| CDY55674 | Canola | nucleus | 18.21 | 21.72 |
| CDY11694 | Canola | nucleus | 18.21 | 21.72 |
| CDX96145 | Canola | nucleus | 18.21 | 21.72 |
| CDY66929 | Canola | nucleus, plastid | 10.69 | 20.9 |
| CDY55900 | Canola | nucleus, plastid | 10.69 | 20.9 |
| CDX91916 | Canola | cytosol | 10.69 | 20.79 |
| CDX85799 | Canola | nucleus | 12.43 | 20.09 |
| CDY64847 | Canola | nucleus | 12.43 | 20.0 |
| CDY61813 | Canola | nucleus | 17.34 | 19.67 |
| CDY58387 | Canola | nucleus | 17.34 | 19.54 |
| CDY18636 | Canola | nucleus | 11.56 | 19.51 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 11.56 | 19.32 |
| CDX74329 | Canola | cytosol | 10.12 | 19.23 |
| CDY21597 | Canola | nucleus | 12.14 | 18.83 |
| CDY01443 | Canola | nucleus | 11.85 | 18.72 |
| CDY12799 | Canola | nucleus | 11.56 | 18.35 |
| CDY30593 | Canola | nucleus | 11.27 | 18.31 |
| CDY63952 | Canola | nucleus | 11.85 | 17.75 |
| CDY43559 | Canola | nucleus | 11.85 | 17.75 |
| CDX68583 | Canola | nucleus | 11.56 | 17.62 |
| CDX83121 | Canola | nucleus | 11.27 | 16.96 |
| CDY17765 | Canola | nucleus | 10.98 | 16.81 |
| CDY51449 | Canola | nucleus | 14.16 | 14.76 |
| CDY48884 | Canola | nucleus | 14.16 | 14.63 |
| CDY32423 | Canola | nucleus | 13.87 | 14.55 |
| CDY62045 | Canola | nucleus | 13.87 | 14.33 |
| CDY03946 | Canola | nucleus | 9.83 | 12.36 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078CWD1 | EnsemblPlants:CDX81461 | ProteinID:CDX81461 | ProteinID:CDX81461.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00135049001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF105 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EB4A85 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC09g08720D
Coordinates
chrLK031824:-:1961759..1963590
Molecular Weight (calculated)
38496.3 Da
IEP (calculated)
5.218
GRAVY (calculated)
-0.749
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAMGEWSTG LGGMYTDEAD FMNQLLASYD QPCGVSSPET TAPAAAYHPE KAHLTGGFCF SQESSSYSAG HSGYYAVMPP REENNNGMED VTINTNLYLV
101: GEEMCECEVA EYSAKSLLPL ETVEENQDDN KRSLETEDDQ KLFNACESSK KRSRAITTDK NKRASKTRKT KKIMEMSDDN NNCGGEVQTE KAGGKRNTKA
201: LKIQKTCYSD DEANGGDTSS CKEGGEDCKA LNLNGKTRAS RGAATDPQSL YARKISYVRL KTKRKTDLMT VQKRRERINE RLKILQNLVP NGTKVDISTM
301: LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDM KLNSLI
101: GEEMCECEVA EYSAKSLLPL ETVEENQDDN KRSLETEDDQ KLFNACESSK KRSRAITTDK NKRASKTRKT KKIMEMSDDN NNCGGEVQTE KAGGKRNTKA
201: LKIQKTCYSD DEANGGDTSS CKEGGEDCKA LNLNGKTRAS RGAATDPQSL YARKISYVRL KTKRKTDLMT VQKRRERINE RLKILQNLVP NGTKVDISTM
301: LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDM KLNSLI
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARLKQLNKV HCMMVQKRRE RINERLRILQ HLVPNGTKVD ISTMLEEAVQ
301: YVKFLQLQIK LLSSDDLWMY APIAYNGMDI GLDLKLNALT R
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARLKQLNKV HCMMVQKRRE RINERLRILQ HLVPNGTKVD ISTMLEEAVQ
301: YVKFLQLQIK LLSSDDLWMY APIAYNGMDI GLDLKLNALT R
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.