Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g049720.1.1 | Tomato | nucleus | 89.18 | 91.28 |
| PGSC0003DMT400008370 | Potato | nucleus | 36.72 | 56.57 |
| PGSC0003DMT400087143 | Potato | nucleus | 54.43 | 49.85 |
| PGSC0003DMT400030165 | Potato | nucleus | 23.93 | 40.11 |
| EER99632 | Sorghum | nucleus | 36.39 | 39.36 |
| CDX72435 | Canola | nucleus | 43.93 | 38.29 |
| Zm00001d021988_P001 | Maize | nucleus | 36.72 | 37.97 |
| Zm00001d006733_P001 | Maize | nucleus | 35.41 | 37.76 |
| Bra036969.1-P | Field mustard | nucleus | 43.28 | 37.71 |
| CDY49379 | Canola | nucleus | 42.95 | 37.43 |
| AT2G14760.3 | Thale cress | nucleus | 41.64 | 37.24 |
| Os07t0588400-00 | Rice | nucleus | 35.74 | 36.95 |
| CDX75386 | Canola | nucleus | 41.97 | 36.89 |
| Bra011476.1-P | Field mustard | nucleus | 41.97 | 36.89 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 38.03 | 36.71 |
| CDX69011 | Canola | nucleus | 41.64 | 36.6 |
| Bra034587.1-P | Field mustard | nucleus | 41.31 | 36.42 |
| AT4G33880.1 | Thale cress | nucleus | 41.97 | 36.36 |
| KRH35669 | Soybean | nucleus | 42.62 | 36.31 |
| KRG91107 | Soybean | nucleus | 42.62 | 36.31 |
| CDX81461 | Canola | nucleus | 40.98 | 36.13 |
| Bra039819.1-P | Field mustard | nucleus | 40.98 | 36.13 |
| CDY37221 | Canola | nucleus | 40.66 | 35.84 |
| CDY28328 | Canola | nucleus | 41.64 | 35.67 |
| PGSC0003DMT400055446 | Potato | nucleus | 41.64 | 35.18 |
| CDY48431 | Canola | nucleus | 29.84 | 28.35 |
| PGSC0003DMT400048857 | Potato | nucleus | 12.79 | 26.35 |
| PGSC0003DMT400020558 | Potato | nucleus | 15.41 | 18.58 |
| PGSC0003DMT400010344 | Potato | nucleus | 13.11 | 17.86 |
| PGSC0003DMT400078776 | Potato | nucleus | 17.38 | 16.72 |
| PGSC0003DMT400073760 | Potato | nucleus | 13.11 | 15.27 |
| PGSC0003DMT400006453 | Potato | nucleus | 18.36 | 14.51 |
| PGSC0003DMT400012487 | Potato | nucleus | 16.07 | 12.56 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400089728 | EnsemblPlantsGene:PGSC0003DMG400039299 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF105 | PFAM:PF00010 | PFscan:PS50888 | PGSC:PGSC0003DMG400039299 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000295FB1E | UniProt:M1DIT4 | MapMan:15.5.32 | : | : |
Description
Transcription factor bHLH84 [Source:PGSC_GENE;Acc:PGSC0003DMG400039299]
Coordinates
chr10:-:14601481..14603179
Molecular Weight (calculated)
34322.3 Da
IEP (calculated)
5.441
GRAVY (calculated)
-0.678
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHVASMFEG DWSSLSGMCF TEEADFMAQL LGNCSFPNDS NNYGVSSGYW NIGHESNIGS SGGREHSGFL FPPPSHESYY SSYSRPILMR NDSSITTERG
101: LMDTNNPIEA DEYFVNNMEF DGNMAEPLLD GKGLQLGRID YERFPEDHSP TESSKKRARL HGHVPKNKRS TKLQTDVKTG EMDGKNKAVL QRQNSMISCC
201: SEDESNVSLE LTQKSRASRG SATDPQSLYA RKRRERINER LKTLQSLIPN GTKVDISTML EEAVQYVKFL QLQIKLLSSE DLWMYAPIAY NGMDLGLDLR
301: IGIPK
101: LMDTNNPIEA DEYFVNNMEF DGNMAEPLLD GKGLQLGRID YERFPEDHSP TESSKKRARL HGHVPKNKRS TKLQTDVKTG EMDGKNKAVL QRQNSMISCC
201: SEDESNVSLE LTQKSRASRG SATDPQSLYA RKRRERINER LKTLQSLIPN GTKVDISTML EEAVQYVKFL QLQIKLLSSE DLWMYAPIAY NGMDLGLDLR
301: IGIPK
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.