Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28328 | Canola | nucleus | 96.82 | 94.1 |
| Bra036969.1-P | Field mustard | nucleus | 84.1 | 83.14 |
| CDY49379 | Canola | nucleus | 84.1 | 83.14 |
| CDX72435 | Canola | nucleus | 83.81 | 82.86 |
| Bra011476.1-P | Field mustard | nucleus | 82.37 | 82.13 |
| Bra039819.1-P | Field mustard | nucleus | 57.8 | 57.8 |
| PGSC0003DMT400008370 | Potato | nucleus | 28.03 | 48.99 |
| Solyc10g049780.1.1 | Tomato | nucleus | 33.53 | 42.65 |
| VIT_03s0091g00730.t01 | Wine grape | nucleus | 42.49 | 42.0 |
| PGSC0003DMT400089728 | Potato | nucleus | 36.42 | 41.31 |
| Solyc10g049720.1.1 | Tomato | nucleus | 35.55 | 41.28 |
| PGSC0003DMT400087143 | Potato | nucleus | 38.73 | 40.24 |
| Solyc01g107140.1.1 | Tomato | nucleus | 37.57 | 39.39 |
| EER99632 | Sorghum | nucleus | 31.79 | 39.01 |
| Bra032846.1-P | Field mustard | nucleus | 27.46 | 38.93 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 34.68 | 37.97 |
| Bra010921.1-P | Field mustard | nucleus | 28.03 | 37.89 |
| Zm00001d021988_P001 | Maize | nucleus | 31.79 | 37.29 |
| Os07t0588400-00 | Rice | nucleus | 31.79 | 37.29 |
| Zm00001d006733_P001 | Maize | nucleus | 30.64 | 37.06 |
| KRG91108 | Soybean | nucleus | 37.57 | 36.83 |
| KRH35668 | Soybean | nucleus | 36.99 | 36.36 |
| Bra030063.1-P | Field mustard | nucleus | 26.59 | 36.08 |
| KRH15444 | Soybean | nucleus | 36.13 | 35.71 |
| KRH35669 | Soybean | nucleus | 36.42 | 35.2 |
| KRH05600 | Soybean | nucleus | 35.26 | 34.56 |
| KRG91107 | Soybean | nucleus | 34.97 | 33.8 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 13.58 | 22.93 |
| Bra012128.1-P | Field mustard | nucleus | 14.16 | 22.37 |
| Bra028895.1-P | Field mustard | nucleus, plastid | 10.98 | 21.47 |
| Bra036071.1-P | Field mustard | nucleus | 13.01 | 21.13 |
| Bra028620.1-P | Field mustard | nucleus | 13.01 | 21.03 |
| Bra036801.1-P | Field mustard | nucleus | 13.87 | 20.78 |
| Bra000979.1-P | Field mustard | cytosol | 10.69 | 20.0 |
| Bra030002.1-P | Field mustard | nucleus | 13.01 | 19.57 |
| Bra019708.1-P | Field mustard | nucleus | 17.34 | 19.54 |
| Bra004169.1-P | Field mustard | nucleus | 13.29 | 17.16 |
| Bra031275.1-P | Field mustard | nucleus | 15.61 | 16.27 |
| Bra001826.1-P | Field mustard | nucleus | 14.45 | 15.43 |
Protein Annotations
| EnsemblPlants:Bra034587.1 | EnsemblPlants:Bra034587.1-P | EnsemblPlantsGene:Bra034587 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF105 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002546596 | UniProt:M4F0J2 | MapMan:15.5.32 | : | : |
Description
AT4G33880 (E=4e-129) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA08:+:12667733..12669218
Molecular Weight (calculated)
38111.2 Da
IEP (calculated)
4.976
GRAVY (calculated)
-0.751
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAMGEWSNN LGGMYTYATE EADFMNQLLT SYDHPGTGSS SGTASADHQG LCWSLGSHHN HLTIMPEASS FCFSGESSSY SEYYAVAPPG VRENNNGSMD
101: FDMVDVTINT NSYLVGEETS ECDVEKYSSG KTRLPLGAVL ETHDDVESML QPEISVTTTD HQKYLTGSKK RSRATSADKN KKAKVGKRGQ KSLEMSGDDR
201: NGGEEEEGEK VKKRKTGPMM SRQNSSITLC SEDESHCASQ DVGGEDEEDA SKALNLNGKT RASRGAATDP QSLYARKRRE RINERLRILQ NLVPNGTKVD
301: ISTMLEEAVH YVKFLQLQIK LLSSDDMWMY APIAFNGMDI GLNSSR
101: FDMVDVTINT NSYLVGEETS ECDVEKYSSG KTRLPLGAVL ETHDDVESML QPEISVTTTD HQKYLTGSKK RSRATSADKN KKAKVGKRGQ KSLEMSGDDR
201: NGGEEEEGEK VKKRKTGPMM SRQNSSITLC SEDESHCASQ DVGGEDEEDA SKALNLNGKT RASRGAATDP QSLYARKRRE RINERLRILQ NLVPNGTKVD
301: ISTMLEEAVH YVKFLQLQIK LLSSDDMWMY APIAFNGMDI GLNSSR
001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR
Arabidopsis Description
BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.