Factsheet for Bra028895.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55900	Canola	nucleus, plastid	100.0	100.0
AT5G01305.1	Thale cress	nucleus, plastid	67.23	69.59
VIT_08s0058g00110.t01	Wine grape	plastid	40.11	44.1
Solyc09g005070.1.1	Tomato	nucleus	31.64	37.84
KRH65648	Soybean	nucleus, plastid	38.42	37.36
KRH75991	Soybean	nucleus, plastid	36.72	36.52
KRH00301	Soybean	nucleus, plastid	35.59	35.8
KRH49427	Soybean	nucleus, plastid	35.03	35.23
GSMUA_Achr4P18820_001	Banana	nucleus	36.16	31.22
HORVU3Hr1G087710.1	Barley	nucleus	31.64	26.67
TraesCS3B01G383000.1	Wheat	nucleus	31.64	26.42
TraesCS3A01G350600.1	Wheat	nucleus	31.64	26.42
TraesCS3D01G344600.1	Wheat	nucleus	31.64	26.29
Zm00001d042989_P001	Maize	nucleus, plastid	31.07	26.07
Zm00001d042988_P001	Maize	nucleus, plastid	31.07	26.07
Os01t0831000-01	Rice	nucleus	31.07	25.58
Bra037128.1-P	Field mustard	cytoskeleton, cytosol, nucleus	26.55	22.93
Bra028620.1-P	Field mustard	nucleus	27.68	22.9
Bra000979.1-P	Field mustard	cytosol	23.73	22.7
Bra036071.1-P	Field mustard	nucleus	25.99	21.6
Bra012128.1-P	Field mustard	nucleus	25.99	21.0
Bra030002.1-P	Field mustard	nucleus	25.99	20.0
Bra036801.1-P	Field mustard	nucleus	25.99	19.91
OQU87789	Sorghum	cytosol	14.12	17.48
Bra032846.1-P	Field mustard	nucleus	19.77	14.34
Bra010921.1-P	Field mustard	nucleus	19.77	13.67
Bra019708.1-P	Field mustard	nucleus	23.16	13.36
Bra030063.1-P	Field mustard	nucleus	19.21	13.33
Bra001826.1-P	Field mustard	nucleus	24.29	13.27
Bra031275.1-P	Field mustard	nucleus	24.29	12.95
Bra034587.1-P	Field mustard	nucleus	21.47	10.98
Bra039819.1-P	Field mustard	nucleus	20.9	10.69
Bra011476.1-P	Field mustard	nucleus	20.9	10.66
Bra036969.1-P	Field mustard	nucleus	20.9	10.57
Bra004169.1-P	Field mustard	nucleus	14.69	9.7

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra028895	EnsemblPlants:Bra028895.1	EnsemblPlants:Bra028895.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006790	GO:GO:0008150
GO:GO:0008152	GO:GO:0009150	GO:GO:0009987	GO:GO:0016787	GO:GO:0046983	GO:GO:0047627
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4EJC9	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF167	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000254362C	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT5G01310 (E=6e-055) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA02:-:1532809..1533342

Molecular Weight (calculated)

20097.5 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.647

Length

177 amino acids

Sequence
(BLAST)

001: MDQSTLHSLN PYSSSTTSSS SSSLHNRKGR IKGNKNQSMS TLSTDPQSVA ARERRHRISD RLKILQSMVP GGAKLDTVSM LDEAISYVKF LKAQIWFHHN
101: MLLFFNDYET TSPCTYSPVV VSEFEPRLFG CDDDYTPVPE TYSQGTPLYM VAEPNNPMWY SSVDDEQQET MHRRGLS

Best Arabidopsis Sequence Match ( AT5G01305.1 )
(BLAST)

001: MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S

Arabidopsis Description

Transcription factor bHLH140-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BD33]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.