CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00301	Soybean	nucleus, plastid	92.61	92.61
KRH65648	Soybean	nucleus, plastid	54.55	52.75
KRH75991	Soybean	nucleus, plastid	52.27	51.69
VIT_08s0058g00110.t01	Wine grape	plastid	44.89	49.07
Solyc09g005070.1.1	Tomato	nucleus	40.34	47.97
KRH52087	Soybean	cytosol, mitochondrion, nucleus	21.02	39.78
AT5G01305.1	Thale cress	nucleus, plastid	36.93	38.01
Bra028895.1-P	Field mustard	nucleus, plastid	35.23	35.03
CDY55900	Canola	nucleus, plastid	35.23	35.03
CDY66929	Canola	nucleus, plastid	35.23	35.03
GSMUA_Achr4P18820_001	Banana	nucleus	39.77	34.15
Os01t0831000-01	Rice	nucleus	39.2	32.09
Zm00001d042989_P001	Maize	nucleus, plastid	38.07	31.75
Zm00001d042988_P001	Maize	nucleus, plastid	38.07	31.75
TraesCS3D01G344600.1	Wheat	nucleus	36.93	30.52
HORVU3Hr1G087710.1	Barley	nucleus	36.36	30.48
TraesCS3A01G350600.1	Wheat	nucleus	36.36	30.19
TraesCS3B01G383000.1	Wheat	nucleus	35.8	29.72
OQU87789	Sorghum	cytosol	18.75	23.08
KRH28464	Soybean	nucleus	26.7	19.42
KRH53884	Soybean	nucleus	25.0	18.8
KRH64060	Soybean	nucleus	25.57	18.52
KRH57944	Soybean	nucleus	26.7	18.5
KRH77007	Soybean	nucleus	26.14	18.33
KRH52010	Soybean	nucleus	26.7	18.22
KRH59559	Soybean	nucleus	26.7	17.67
KRH61303	Soybean	nucleus	26.14	17.42
KRH43543	Soybean	nucleus	26.7	17.34
KRH04603	Soybean	nucleus	26.14	16.31
KRH15121	Soybean	nucleus	24.43	14.68
KRH73015	Soybean	nucleus	24.43	14.58
KRG97923	Soybean	nucleus	23.86	12.39
KRH30960	Soybean	nucleus	23.3	12.09
KRH61404	Soybean	nucleus	21.59	11.45
KRH35669	Soybean	nucleus	22.73	11.17
KRG91107	Soybean	nucleus	22.73	11.17
KRH05600	Soybean	nucleus	22.16	11.05
KRH15444	Soybean	nucleus	21.59	10.86
KRH35668	Soybean	nucleus	21.59	10.8
KRG91108	Soybean	nucleus	21.59	10.76
KRH09982	Soybean	nucleus	26.7	10.56
KRH23349	Soybean	nucleus	26.14	10.22
KRH47179	Soybean	nucleus	23.3	9.51
KRH44227	Soybean	nucleus	22.73	9.03

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02004362	EnsemblPlantsGene:GLYMA_07G153600	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:K7L1X0
EnsemblPlants:KRH49427	ProteinID:KRH49427	ProteinID:KRH49427.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF167	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00023C75EA	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:18777273..18777803

Molecular Weight (calculated)

19711.1 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.674

Length

176 amino acids

Sequence
(BLAST)

001: MECINNPTSC EGSSSSSKHP NKSNREKKGV RKSNKGGGGG VRLSTDPQSV AARERRHRIS DRFKILQSMV PGGSKMDTVS MLECAIHYVK FLQTEILLHQ
101: ALIDFVDVDH HESPLFLPAE YNNFPDEHSN ISLQQNPSSV SVHSHHHQQS LPQLPLSQCY FQGEEDFNTF DAIMPP

Best Arabidopsis Sequence Match ( AT5G01305.1 )
(BLAST)

001: MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S

Arabidopsis Description

Transcription factor bHLH140-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BD33]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.