Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66470.1 | KRH14475 | AT2G42870.1 | 21798944 |
| AT1G66470.1 | KRH73670 | AT2G42870.1 | 21798944 |
| AT1G66470.1 | KRH04244 | AT5G47100.1 | 21798944 |
| AT1G66470.1 | KRH28207 | AT5G47100.1 | 21798944 |
| AT1G66470.1 | KRH57533 | AT5G47100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30960 | Soybean | nucleus | 88.2 | 88.2 |
| KRH15121 | Soybean | nucleus | 59.88 | 69.28 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 24.48 | 68.59 |
| KRH73015 | Soybean | nucleus | 59.59 | 68.47 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 47.49 | 46.4 |
| PGSC0003DMT400078776 | Potato | nucleus | 41.3 | 44.16 |
| KRH52087 | Soybean | cytosol, mitochondrion, nucleus | 12.09 | 44.09 |
| Solyc02g091440.1.1 | Tomato | nucleus | 41.0 | 43.85 |
| CDY55674 | Canola | nucleus | 36.58 | 42.76 |
| CDX68049 | Canola | nucleus | 36.28 | 42.41 |
| CDX96145 | Canola | nucleus | 36.28 | 42.41 |
| CDY11694 | Canola | nucleus | 36.28 | 42.41 |
| AT1G66470.1 | Thale cress | nucleus | 36.58 | 41.61 |
| GSMUA_Achr10P... | Banana | nucleus | 36.58 | 41.61 |
| AT5G37800.1 | Thale cress | nucleus | 36.58 | 40.39 |
| CDY61813 | Canola | nucleus | 35.99 | 40.0 |
| CDY58387 | Canola | nucleus | 35.99 | 39.74 |
| Bra019708.1-P | Field mustard | nucleus | 35.69 | 39.41 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 36.87 | 38.82 |
| Bra004169.1-P | Field mustard | nucleus | 29.79 | 37.69 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 30.38 | 37.59 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 30.38 | 37.45 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 30.09 | 37.23 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 29.79 | 36.86 |
| Os02t0710300-01 | Rice | nucleus | 32.45 | 36.67 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 36.28 | 36.28 |
| Zm00001d017804_P001 | Maize | nucleus | 30.97 | 35.59 |
| EES07381 | Sorghum | nucleus | 30.68 | 33.99 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 28.61 | 33.92 |
| TraesCS6D01G256600.1 | Wheat | nucleus | 28.61 | 33.56 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 28.02 | 33.45 |
| EES00435 | Sorghum | nucleus | 28.61 | 33.45 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 28.02 | 33.33 |
| Os01t0111500-01 | Rice | nucleus | 28.91 | 33.22 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 28.32 | 33.22 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 27.73 | 33.22 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 28.32 | 32.99 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 28.32 | 32.88 |
| TraesCS6D01G256300.1 | Wheat | nucleus | 28.32 | 32.65 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 27.43 | 32.52 |
| Zm00001d008444_P001 | Maize | nucleus | 30.38 | 31.69 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 25.66 | 31.64 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 27.73 | 28.4 |
| Os06t0496400-01 | Rice | nucleus | 23.89 | 27.55 |
| KRH49427 | Soybean | nucleus, plastid | 12.39 | 23.86 |
| KRH00301 | Soybean | nucleus, plastid | 12.39 | 23.86 |
| KRH65648 | Soybean | nucleus, plastid | 12.68 | 23.63 |
| KRH75991 | Soybean | nucleus, plastid | 12.09 | 23.03 |
| KRH28464 | Soybean | nucleus | 13.57 | 19.01 |
| KRH57944 | Soybean | nucleus | 14.16 | 18.9 |
| KRH61404 | Soybean | nucleus | 18.29 | 18.67 |
| KRH64060 | Soybean | nucleus | 12.98 | 18.11 |
| KRH77007 | Soybean | nucleus | 13.27 | 17.93 |
| KRH35669 | Soybean | nucleus | 18.58 | 17.6 |
| KRH53884 | Soybean | nucleus | 12.09 | 17.52 |
| KRH15444 | Soybean | nucleus | 17.99 | 17.43 |
| KRH35668 | Soybean | nucleus | 17.99 | 17.33 |
| KRG91107 | Soybean | nucleus | 18.29 | 17.32 |
| KRH59559 | Soybean | nucleus | 13.27 | 16.92 |
| KRH04603 | Soybean | nucleus | 13.86 | 16.67 |
| KRH61303 | Soybean | nucleus | 12.98 | 16.67 |
| KRH43543 | Soybean | nucleus | 13.27 | 16.61 |
| KRH05600 | Soybean | nucleus | 17.11 | 16.43 |
| KRH52010 | Soybean | nucleus | 12.09 | 15.89 |
| KRG91108 | Soybean | nucleus | 16.52 | 15.86 |
| KRH09982 | Soybean | nucleus | 13.57 | 10.34 |
| KRH23349 | Soybean | nucleus | 13.57 | 10.22 |
| KRH47179 | Soybean | nucleus | 12.68 | 9.98 |
| KRH44227 | Soybean | nucleus | 12.39 | 9.48 |
Protein Annotations
| EntrezGene:100810010 | MapMan:15.5.32 | Gene3D:4.10.280.10 | EMBL:ACUP02010825 | EnsemblPlantsGene:GLYMA_18G039200 | GO:GO:0001046 |
| GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | UniProt:I1MZD5 | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:KRG97923 |
| ProteinID:KRG97923 | ProteinID:KRG97923.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF19 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000233E5A0 | InterPro:bHLH_dom | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr18:-:3182661..3184500
Molecular Weight (calculated)
37948.7 Da
IEP (calculated)
8.967
GRAVY (calculated)
-0.736
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSKDQRIP HDSSMSSKVQ NCVFSETSVE ITSMTVHRVN EYHKSVLEEE DGSQTTNGLS NDSAVTRSPP LCGSRKDYAY KGTNYQLEEA VSLIDFKGYS
101: NILQASGSLL SFQQNKMVPL NCYLKDNGQK EYCVWENNLH QGHNHWNQTS PRSTRDMRLV ENLNCFQTSS GYSPIVNNAK EKQHGQSSSG WLYSAPTIPN
201: DISSLHKSGA QESVLQKRPS MGENMKAAKK QCSTESKTPK HKSSPSKDPQ SVAAKNRRER ISERLKILQE LVPNGSKVDL VTMLEKAISY VKFLQLQVKV
301: LATDEFWPVQ GGKPPEISQV KEVIDVILSS QRERSSCSK
101: NILQASGSLL SFQQNKMVPL NCYLKDNGQK EYCVWENNLH QGHNHWNQTS PRSTRDMRLV ENLNCFQTSS GYSPIVNNAK EKQHGQSSSG WLYSAPTIPN
201: DISSLHKSGA QESVLQKRPS MGENMKAAKK QCSTESKTPK HKSSPSKDPQ SVAAKNRRER ISERLKILQE LVPNGSKVDL VTMLEKAISY VKFLQLQVKV
301: LATDEFWPVQ GGKPPEISQV KEVIDVILSS QRERSSCSK
001: MSLINEHCNE RNYISTPNSS EDLSSPQNCG LDEGASASSS STINSDHQNN QGFVFYPSGE TIEDHNSLMD FNASSFFTFD NHRSLISPVT NGGAFPVVDG
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE
Arabidopsis Description
BHLH86RSL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.