CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04603
KRH28464
KRH57944
KRH77007

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50330.1	KRH04603	AT3G50330.1	21798944
AT3G50330.1	KRH28464	AT3G50330.1	21798944
AT3G50330.1	KRH57944	AT3G50330.1	21798944
AT3G50330.1	KRH77007	AT3G50330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57944	Soybean	nucleus	80.85	89.76
Solyc12g088790.1.1	Tomato	nucleus	30.14	70.25
KRH28464	Soybean	nucleus	56.38	65.7
KRH77007	Soybean	nucleus	57.45	64.54
PGSC0003DMT400048857	Potato	nucleus	30.85	58.78
Bra036071.1-P	Field mustard	nucleus	40.78	53.99
CDY30593	Canola	nucleus	40.43	53.52
Bra037128.1-P	Field mustard	cytoskeleton, cytosol, nucleus	38.65	53.17
CDY18636	Canola	nucleus	38.3	52.68
CDX81342	Canola	cytoskeleton, cytosol, nucleus	37.94	51.69
CDY12799	Canola	nucleus	39.72	51.38
CDX68583	Canola	nucleus	41.13	51.1
CDY17765	Canola	nucleus	40.78	50.88
CDY63952	Canola	nucleus	41.49	50.65
AT3G50330.1	Thale cress	nucleus	41.49	50.65
CDY43559	Canola	nucleus	41.49	50.65
Bra036801.1-P	Field mustard	nucleus	41.49	50.65
CDY01443	Canola	nucleus	39.01	50.23
Bra012128.1-P	Field mustard	nucleus	39.01	50.23
Bra030002.1-P	Field mustard	nucleus	40.78	50.0
CDX83121	Canola	nucleus	40.78	50.0
PGSC0003DMT400010344	Potato	nucleus	38.3	48.21
AT5G67060.1	Thale cress	nucleus	41.13	48.13
KRH61303	Soybean	nucleus	43.97	46.97
KRH52010	Soybean	nucleus	42.91	46.9
KRH52087	Soybean	cytosol, mitochondrion, nucleus	14.18	43.01
HORVU7Hr1G054880.1	Barley	nucleus	33.69	42.79
TraesCS7A01G262600.1	Wheat	nucleus	33.33	42.73
TraesCS7B01G160500.1	Wheat	nucleus	33.33	42.53
TraesCS7D01G263400.1	Wheat	nucleus	32.98	42.27
Os09t0455300-01	Rice	nucleus	34.04	40.68
Zm00001d050016_P001	Maize	nucleus	34.4	40.25
GSMUA_Achr9P15380_001	Banana	nucleus	34.04	39.18
TraesCS5A01G237500.1	Wheat	nucleus	32.27	38.72
TraesCS5D01G244000.1	Wheat	nucleus	32.27	38.72
HORVU5Hr1G068110.1	Barley	nucleus	32.62	38.66
TraesCS6A01G142000.1	Wheat	nucleus	31.91	38.3
TraesCS5B01G235200.1	Wheat	nucleus	31.91	38.3
Zm00001d020705_P001	Maize	nucleus	32.27	37.6
KRH53884	Soybean	nucleus	30.5	36.75
Zm00001d031781_P001	Maize	nucleus	32.62	36.65
KRH64060	Soybean	nucleus	31.56	36.63
EES15124	Sorghum	nucleus	34.75	36.43
EER96848	Sorghum	nucleus	32.27	34.87
Zm00001d005841_P001	Maize	nucleus	28.72	33.47
KRH59559	Soybean	nucleus	31.21	33.08
KRH43543	Soybean	nucleus	31.21	32.47
KRH65648	Soybean	nucleus, plastid	18.09	28.02
KRH75991	Soybean	nucleus, plastid	17.38	27.53
KRH00301	Soybean	nucleus, plastid	16.67	26.7
KRH49427	Soybean	nucleus, plastid	16.31	26.14
KRH47179	Soybean	nucleus	29.08	19.03
KRH44227	Soybean	nucleus	28.72	18.28
KRH09982	Soybean	nucleus	28.37	17.98
KRH23349	Soybean	nucleus	28.01	17.56
KRG91108	Soybean	nucleus	21.63	17.28
KRH35668	Soybean	nucleus	20.21	16.19
KRH61404	Soybean	nucleus	18.44	15.66
KRG91107	Soybean	nucleus	19.86	15.64
KRH35669	Soybean	nucleus	19.86	15.64
KRH15121	Soybean	nucleus	15.6	15.02
KRH73015	Soybean	nucleus	15.6	14.92
KRH30960	Soybean	nucleus	17.38	14.45
KRG97923	Soybean	nucleus	16.67	13.86
KRH05600	Soybean	nucleus	16.31	13.03
KRH15444	Soybean	nucleus	15.6	12.57

Protein Annotations

EntrezGene:100812308	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02010458	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G173100
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1MVX1
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH04603	ProteinID:KRH04603	ProteinID:KRH04603.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF74	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00023D625D
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:17848992..17850382

Molecular Weight (calculated)

31527.7 Da

IEP (calculated)

9.757

GRAVY (calculated)

-0.518

Length

282 amino acids

Sequence
(BLAST)

001: MDVDIVKTSN NNNNMDVMAM MMQMEKFPEL LFCDDPFYTT TPTYQETDLL SSGRSSSSTT SASTLFNNNV TTTIPPTTTP SNNVVQFSNI DDLFQQQPPM
101: SQSLQLQPYP SEKKKKNNNS MAAMREMIFR IAVMQPVHID PESIKPPKRR NVKISKDPQS VAARHRRERI SERIRILQRL VPGGTKMDTA SMLDEAIHYV
201: KFLKKQVQTL EQAGANRSPH SSNNNNNILN TTHVVGAVGF PLGMSSNYSN NIISNVVNYS LLMKGGCQPC QVFGSTSKQL LS

Best Arabidopsis Sequence Match ( AT5G67060.2 )
(BLAST)

001: MEKLPEFCNP NSSFFSPDHN NTYPFLFNST HYQSDHSMTN EPGFRYGSGL LTNPSSISPN TAYSSVFLDK RNNSNNNNNG TNMAAMREMI FRIAVMQPIH
101: IDPEAVKPPK RRNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEQAVVTG GGGGGGGRVL IGGGGMTAAS
201: GGGGGGGVVM KGCGTVGTHQ MVGNAQILR

Arabidopsis Description

HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.