Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G068110.1 | |
| HORVU6Hr1G088020.4 | |
| HORVU7Hr1G026560.2 | |
| HORVU7Hr1G054880.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G262600.1 | Wheat | nucleus | 90.99 | 91.82 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 90.99 | 91.82 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 90.54 | 90.95 |
| Solyc12g088790.1.1 | Tomato | nucleus | 35.14 | 64.46 |
| Zm00001d050016_P001 | Maize | nucleus | 68.47 | 63.07 |
| EES15124 | Sorghum | nucleus | 72.97 | 60.22 |
| Zm00001d031781_P001 | Maize | nucleus | 64.41 | 56.97 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 58.11 | 54.2 |
| PGSC0003DMT400048857 | Potato | nucleus | 34.23 | 51.35 |
| CDY18636 | Canola | nucleus | 42.79 | 46.34 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 42.79 | 46.34 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 50.9 | 46.12 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 42.79 | 45.89 |
| Bra036071.1-P | Field mustard | nucleus | 42.79 | 44.6 |
| CDY30593 | Canola | nucleus | 42.79 | 44.6 |
| Bra036801.1-P | Field mustard | nucleus | 45.05 | 43.29 |
| CDY43559 | Canola | nucleus | 45.05 | 43.29 |
| CDY63952 | Canola | nucleus | 45.05 | 43.29 |
| CDY12799 | Canola | nucleus | 42.34 | 43.12 |
| CDX68583 | Canola | nucleus | 43.24 | 42.29 |
| CDX83121 | Canola | nucleus | 43.69 | 42.17 |
| Bra030002.1-P | Field mustard | nucleus | 43.69 | 42.17 |
| CDY01443 | Canola | nucleus | 41.44 | 42.01 |
| Bra012128.1-P | Field mustard | nucleus | 41.44 | 42.01 |
| AT3G50330.1 | Thale cress | nucleus | 43.69 | 41.99 |
| CDY17765 | Canola | nucleus | 42.34 | 41.59 |
| AT5G67060.1 | Thale cress | nucleus | 44.14 | 40.66 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 10.81 | 40.0 |
| PGSC0003DMT400010344 | Potato | nucleus | 40.09 | 39.73 |
| KRH28464 | Soybean | nucleus | 41.44 | 38.02 |
| KRH77007 | Soybean | nucleus | 42.34 | 37.45 |
| HORVU0Hr1G019640.1 | Barley | cytosol | 31.08 | 37.1 |
| KRH57944 | Soybean | nucleus | 40.54 | 35.43 |
| KRH04603 | Soybean | nucleus | 42.79 | 33.69 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 23.42 | 24.76 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 36.94 | 24.19 |
| HORVU3Hr1G066600.2 | Barley | nucleus | 31.08 | 17.04 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 30.18 | 16.75 |
| HORVU2Hr1G035190.9 | Barley | nucleus | 19.82 | 14.72 |
| HORVU3Hr1G048770.1 | Barley | plastid | 31.53 | 14.52 |
| HORVU5Hr1G018100.1 | Barley | cytosol, mitochondrion, nucleus | 18.47 | 13.14 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 17.12 | 13.01 |
| HORVU4Hr1G069820.2 | Barley | nucleus | 18.92 | 12.77 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 17.12 | 11.48 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 10.36 | 6.82 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G054880.1 | EnsemblPlantsGene:HORVU7Hr1G054880 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000B488C70 | UniProt:A0A287WJX2 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:222639811..222641222
Molecular Weight (calculated)
24192.6 Da
IEP (calculated)
9.433
GRAVY (calculated)
-0.623
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDTLNSHP EAQLELMNAM LQLEQLTALP DHGMPAPPSP CTQPQAPRHH FSSAPHMASA NVNAGGAYHD PYSQPPNSAP YSASHRRSGS EYTATSQPPT
101: EGAGATGPAA MREMIFRIAA LQPVNIDPDT VRPPKRRNVR ISTDPQSVAA RMRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KTQVQSLERA
201: AAANGHRASP NAATYQGLNG PW
101: EGAGATGPAA MREMIFRIAA LQPVNIDPDT VRPPKRRNVR ISTDPQSVAA RMRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KTQVQSLERA
201: AAANGHRASP NAATYQGLNG PW
001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
Arabidopsis Description
HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.